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85 protocols using originpro 2023

1

Calcium Binding Kinetics Elucidation

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All MS data was processed using Xcalibur
(version 4.3), OriginPro 2023, and Python. Titration data were fit
with a sequential binding model with slight changes made to previously
described methods.45 (link) Notably, to calculate
mole fractions as a function of the total Ca2+ concentration
(rather than the free ligand concentration), equilibrium populations
were calculated from kinetic simulations of the system. KD values are reported as mean ± s.d., where standard
deviations were derived from an estimated covariance matrix and are
plotted as error bars in Figure 3d. P-values were determined using
a two-sampled t test in OriginPro 2023. The KD values for Ca2+ binding were not
determined for the truncations.
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2

Quantitative Analysis of Protein Secondary Structure

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The relative percentage area of each IR band in the region of 1500 to 1700 cm−1 was determined by the second-derivative transformation of raw absorption spectra to resolve overlapping bands using OriginPro 2023 (Origin Lab, MA, Northampton, USA) [62 (link)]. Raw spectral data were first normalized, smoothed (SG, 5-points), second derivative-transformed (SG, 7-points), multiplied by (−1) to invert second derivative IR bands, and finally baseline-corrected. Then, absorbance spectra were fitted using full width at half maximum (FWHM) Gaussian band profiles using the Multipeak option (Figure 1). In the fitting process, the height and width of selected IR bands varied until the best fit with the experimental curve (Chi-square tolerance value of 1 × 10−9, <400 iterations) was found. The goodness of the fit was determined by observing the F-statistics and values of Chi-square [63 (link)]. In order to test the statistical significance of the relative percentage area of each IR band deconvoluted, one-factor analysis of variance (ANOVA) was performed using OriginPro 2023 (Origin Lab, Northampton, MA, USA). The mean values were compared using Tukey’s test at the 5% significance level.
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3

Antioxidants and Phenolics in Highbush Blueberry Leaves

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All analyses were performed in three independent replications for each sample. The contents of phenolic compounds, arbutin hydroquinone content and antioxidant activity were expressed as the mean ± standard deviation. The acquired findings were subjected to statistical analyses with the use of Statistica v13.1 (StatSoft Inc., Tulsa, OK, USA). Significant differences between types of highbush blueberry leaves based on the tested parameters were obtained through a one-way analysis of variance (ANOVA), followed by the Tukey multiple comparison test. The multivariate statistical analysis was performed using cluster analysis (CA), combined with a heat map with the use of Statistica v13.1 (StatSoft Inc., Tulsa, OK, USA) and principal component analysis (PCA) with the use of OriginPro 2023 (OriginLab Corporation, Northampton, MA, USA). Correlations between tested parameters were established using Pearson’s correlation test and presented as a triangle heat map with the use of OriginPro 2023 (OriginLab Corporation, Northampton, MA, USA).
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4

Adsorption Kinetics and Isotherms of Lead and Nickel

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At the best conditions obtained, i.e., those values of temperature, particle size, and adsorbent dose that presented the highest removal percentage for each metal and biomass, kinetic studies were carried out by taking samples at different time intervals over a total of 24 h. The results obtained in each of the kinetic tests were adjusted to the kinetic models of pseudo-first order, pseudo-second order, Elovich, and intraparticle diffusion by non-linear fitting in the OriginPro 2023 software (Northampton, MA, USA) to understand the behavior of Pb2+ and Ni2+ adsorption with each adsorbent over time and determine the mechanism by which the adsorption process occurs in each of these systems. The study of adsorption isotherms was carried out by varying the initial concentration at the best experimental conditions obtained from the execution of the experimental design in Table 1 and adjusting the experimental data to the Langmuir, Freundlich, Dubinin-Radushkevich (D-R), Redlich-Peterson (R-P), and Temkin models.
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5

Staphylococcal Biochemical Characterization

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One-way analysis of variance was performed on the significance level of P < 0.05 in isolates of proteolytic activity, lipase activity, BAs, and FAAs using IBM SPSS Statistics (version 29.0, IBM Co., USA). Graphics were constructed using OriginPro 2023 software (Origin Lab Corp., MA, USA) and GraphPad Prism 9 (GraphPad Software, Boston, USA). Biochemical reactions, safety indices, enzymatic characterization and fermentation performance of Staphylococci were repeated three times, and all the analyses were performed in triplicate. Data were expressed as mean ± standard error (n = 3).
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6

Statistical Analysis of Experimental Data

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The data were analyzed through Originpro 2023 software (Northampton, Massachusetts, USA). Data are expressed in the form of Mean ± SD. One-way (ANOVA), as well as the Bonferroni method, was used for comparison between groups. P < 0.05 was considered statistically significant.
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7

Statistical Analysis of Experimental Data

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All the experiments were repeated at least three times. Excel 2020 was used to calculate means and standard errors for all data. OriginPro 2023 software (Northampton, MA, USA) was used for graphing. SPSS 26.0 software (SPSS, Inc., Chicago, IL, USA) was used to analyze the difference significance (p < 0.05).
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8

Comprehensive Characterization of Biobased Compounds

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All analyses were performed in triplicate. The data were presented as mean value±standard deviation. Statistical analysis was carried out by analysis of variance (ANOVA), followed by Tukey's test to determine significant differences between samples with a 95 % confidence interval (p≤0.05), which was represented by superscript letters on the standard deviation values. Statistica 8.0 software (28 ) was used for the Plackett-Burman and Box-Behnken experimental designs and their respective analyses, as well as for all colourimetric, pH and total acidity analyses. OriginPro 2023 software (29 ) was applied for the determination of BC crystallinity and thermal stability analyses.
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9

Determining PCNA Stability via Fluorescence

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The intrinsic tryptophan fluorescence measurements were carried out in PBS containing 20 µL of 0.2 mg/mL PCNAWT or PCNAC148S solution in a 384 well microplate (788876, Greiner Bio-One, Kremsmünster, Austria). Chemical denaturation was induced by increasing urea concentrations (0–8 M) and a subsequent incubation at RT for 5 h. The intrinsic tryptophan fluorescence was excited at 284 nm and the emission were detected at 320 nm with a bandwidth of 9 nm at RT by using the plate reader Synergy MX (BioTek Instruments GmbH, Bad Friedrichshall, Germany). The normalized fluorescence intensities of three measurements in duplicates were plotted against the urea concentration. The Cm-values were determined by using Equation (6) and OriginPro 2023 (OriginLab Corporation, Northampton, MA, USA), where A2 is the final value, A1 is the initial value, x0 is the center and p is the power.
y=A2+(A1A2)/(1+(x/x0)^p)
Due to the biphasic denaturation profile of PCNAWT, the graph was split into two graphs for the determination of the Cm-values. The given deviation of the Cm values is the standard error of the fit.
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10

Kinetic Analysis of DHQD Mutants

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The statistical analysis of Vmax, KM and kcat values were carried out using Michaelis Menten models with OriginPro 2023 software (Originlab Corporation, USA). To compare the relative activity of the mutants with that of wild type, mutant proteins were purified using same procedure as the wild type CgDHQD. The activity of other variants was measured using 20 μM enzymes and 2,000 μM substrate. All assay experiments were conducted in triplicate at room temperature, with a reaction mixture of 0.5 ml to obtain idealized data.
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