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Cdna synthesis kit

Manufactured by Beyotime
Sourced in China

The cDNA Synthesis Kit is a laboratory tool used to generate complementary DNA (cDNA) from extracted RNA. It provides the necessary reagents and protocols to efficiently convert RNA into single-stranded cDNA, which can then be used for various downstream applications, such as gene expression analysis, cloning, and sequencing.

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18 protocols using cdna synthesis kit

1

Quantitative Real-Time PCR Expression Analysis

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Total RNA was isolated by using RNAiso Plus (TaKaRa) and then synthesized into cDNA by using the cDNA Synthesis Kit (Beyotime, China). Real-time PCR was performed with a SYBR Green Real-time PCR Master Mix kit (Beyotime, China). Real-time PCR was performed on an Applied Biosystems, StepOnePlus Instrument (USA) with the following cycling program: 95°C for 5 min pre-degeneration, followed by 40 cycles of amplification at 95°C for 15 min and 60°C for 60 s, then 95°C for 15 s. The gene expression level was normalized by GADPH, and ΔΔCT was calculated by referring to the control group. The primers used are listed in Table 1.
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2

Characterization of HeLa Cell Transcriptional Response

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HeLa human cervical cancer cells were purchased from Shanghai Beinuo Biological Technology Co., Ltd. (Shanghai, China). Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum and trypsin digestion enzymes were purchased from Hyclone; GE Healthcare (Logan, UT, USA). PBS and antibiotics were purchased from Beyotime Institute of Biotechnology (Haimen, China). A liposome cell transfection kit was purchased from Invitrogen; Thermo Fisher Scientific, Inc. (Waltham, MA, USA). An RNA extraction kit (TRIzol) and a cDNA synthesis kit were purchased from Beyotime Institute of Biotechnology. Anti-human TNF-α antibody was purchased from Shanghai Xin Le Biotechnology Co., Ltd. (Shanghai, China). Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) amplification reagents were purchased from Omega Bio-Tek, Inc. (Norcross, GA, USA). Hoechest-33,342 stain was purchased from Beijing Suolaibao Biotechnology Co., Ltd. (Beijing, China). Primers were synthesized by Shanghai Shenggong Co., Ltd. (Shanghai, China).
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3

Quantitative Analysis of TRIM3 mRNA Expression

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Total RNA in venous blood samples, midbrain tissues of mice and SH-SY5Y cells was extracted by using TRizol reagent (Life Technologies, MD, USA). cDNA synthesis kit (Beyotime, Shanghai, China) was used to perform reverse transcription reaction to synthesize cDNA templates. qRT-PCR was carried out using the Power SYBR GREEN PCR master mix (Applied Biosystems, CA, USA) with the 7000 Sequence Detection System (Applied Biosystems, CA, USA). The reaction parameters were as follows: 95° C for 10 min, and 40 cycles at 95° C for 15 s and 60° C for 30 s. The primer sequences were as follows: TRIM3, forward: 5'-GGCTGACTGGGGCAACAGCCGCATC-3', reverse: 5'-ATCTGCAGAACCACTGTATGGTCCA-3'. GAPDH, forward: 5'-GAAGGTGAAGGTCGGAGTC-3', reverse: 5'-GAAGATGGTGATGGGATTTC-3'. The relative expression of TRIM3 mRNA was normalized to GAPDH and calculated by 2-ΔΔCt method.
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4

Quantification of Rab8A Gene Expression

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The whole RNA was extracted by using TRIzol kit (Invitrogen, USA) and reversely transcribed into cDNA by using the cDNA synthesis kit (Beyotime, China). SYBR Green qPCR mix (Beyotime, China) was applied to measure the relative expression of Rab8A in the ABI 7900 system. The expression of Rab8A was calculated by using the 2-ΔΔCt method. Three independent experiments were carried out to determine Rab8A expression. GAPDH was regarded as the internal reference. The sequences of primers were listed as follows: Rab8A, forward: 5′-CTACGACATCACCAACGAGAAG-3′, Rab8A, reverse: 5′-CATCACACTTGTTCCCGAGTAT-3′; GAPDH, forward: 5′-GCACCGTCAAGGCTGAGAAC-3′, GAPDH, reverse: 5′-TGGTGAAGACGCCAGTGGA-3′.
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5

Quantitative analysis of miRNA-200c and LDHA

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Total RNA including miRNA was extracted from the NSCLC tissues and cell lines using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The first-strand cDNA was synthesized using the cDNA synthesis kit (Beyotime, Shanghai, P.R. China). RT-qPCR analysis was performed using SYBR Green qPCR Mix (Beyotime) on Applied Biosystems 7500 equipment (Foster City, CA, USA). The PCR conditions were as follows: 95°C for 5 min, and 40 cycles of denaturation at 95°C for 15 s and annealing/elongation at 60°C for 30 s. U6 snRNA and β-actin were used as internal control to normalize the expression of miR-200c and LDHA. The primers used in this study were as follows: miR-200c, 5′-CTTAAAGCCCCTTCGTCTCC-3′ (forward) and 5′-AGGGGTGAAGGTCAGAGGTT-3′ (reverse); U6 snRNA, 5′-TGCGGGTGCTCGCTTCGGCAGC-3′ (forward) and 5′-CCAGTGCAGGGTCCGAGGT-3′ (reverse); LDHA, 5′-GGTTGGTGCTGTTGGCATGG-3′ (forward) and 5′-TGCCCCAGCCGTGATAATGA-3′ (reverse); β-actin, 5′-TGGCACCCAGCACAATGAA-3′ (forward) and 5′-CTAAGTCATAGTCCGCCTAGAAGCA-3′ (reverse). The relative expression level was measured with the 2−ΔΔCT method.
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6

Real-Time PCR Analysis of TalaA-Treated Cells

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The RNA was extracted by TRIzol reagent (ThermoFisher Scientific, USA) from SW480 cells with different concentrations of TalaA treatment. The cDNA was synthesized with a cDNA synthesis kit (D7170M, Beyotime, China), and the real-time PCR was performed using a SYBR Green qPCR kit (D7260, Beyotime, China) in a light cycler 480 II (Roche, USA). The primer sequences for real-time PCR are listed in Table 1.

The primer list for real-time PCR.

Nameq-PCR primer
FTL

Forward: 5′-GCTCCCAGATTCGTCAGAA-3′

Reverse: 5′-CCCAGAGAGAGGTAGATGTAGG-3′

FTH1P23

Forward: 5′-CAGGTGAAAGCCATCAAAGA-3′

Reverse: 5′-TTATCACTGTCTCCCAGCG-3′

SAT2

Forward: 5′-TGATTCGGGTGAAGACTGC-3′

Reverse: 5′-TCTCCAAAGCCATCTGCTC-3′

HMOX1

Forward: 5′-ATTGCCAGTGCCACCAAGT-3′

Reverse: 5′-TGAGCAGGAACGCAGTCTT-3′

ALOXE3

Forward: 5′-TGTATTTCGCTTTCCTGACC-3′

Reverse: 5′-CTTGTTTGCTTGCCTCTGA-3′

ACSL5

Forward: 5′-TAGAAGCACTGAGAGATGCG-3′

Reverse: 5′-TTGTGAACAGCAGCAGGA-3′

SLC7A11

Forward: 5′-TATCCCTGGCATTTGGAC-3′

Reverse: 5′-TCACTACAGTTATGCCCACAG-3′

GSS

Forward: 5′-ACAGGATGACTTTACCGCTC-3′

Reverse: 5′-AGCGGTAAAGTCATCCTGTT-3′

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7

Lung Tissue mRNA Expression Analysis

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All animals were sacrificed, and lung tissues were isolated. TransZol reagent was used for isolation of total RNA from the lung tissue and a cDNA synthesis kit (Beyotime, Shanghai, China) was used to synthesize the first-strand cDNA, as per the manufacturer’s instructions. The RT-PCR was performed to determine the messenger RNA (mRNA) level of fission- and fusion-related genes, using a SYBR Premix Ex Taq kit (Takara Bio Inc., Shiga, Japan). An iCycler iQ Real-Time PCR Detection System (Bio-Rad) was used for PCR amplification with 20 μL reaction solution containing cDNA (1 μL), reverse and forward primers (1 μL), SYBR Premix Ex Taq (10 μL), and ddH2O (7 μL). Thermal cycling, including denaturation, was performed for 30 seconds at 95°C, and thereafter for 20 seconds at 94°C (40 cycles). Fis1, Drp1, OPA1, and actin were assessed at 55°C, and Mfn1 and Mfn2 were evaluated at 60°C for 20 seconds. The mRNA signal was estimated for quantification of the relative expression of the target genes, with actin used as an internal control. In all samples, the target gene copy number/actin mRNA ratio was determined.
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8

Quantitative RT-PCR for Gene Expression

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Total RNA was extracted using Trizol reagent (Thermo Fisher Scientific) and then reversely transcribed into cDNA using the cDNA Synthesis Kit (Beyotime, Shanghai, China). Synthesized cDNA was subsequently subjected to RT-qPCR utilizing RT-qPCR kits (Q511–02, Vazyme Biotech, Nanjing, China) and CFX96 Real-Time PCR system (Bio-Rad, Hercules, CA), with GAPDH as an internal control. Further, the 2−ΔΔCt method was used for relative quantification. Primers were commercially designed (Sangon Biotech, Shanghai, China), as listed in Supplementary Table S1.
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9

Quantification of Autophagy-Related Genes

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Total RNA from cells was purified using an RNeasy kit (Beyotime Biotechnology, R0026), and reverse transcribed into cDNA using a cDNA synthesis kit (Beyotime Biotechnology, D7170M). The Egr-1 primer sequences were as follows: forward, 5’-CCGCTTTTCTCGCTCGGATG-3’; reverse, 5’-GCGGATGTGGGTGGTAAGGT-3’. The LC3A primer sequences were as follows: forward, 5’-CGTCACCCAGGCGAGTTACC-3’; reverse, 5’- AGAGATGCGTCTGCGGTTCG-3’. The LC3B primer sequences were as follows: forward, 5’- GTGATCGTCGCCGGAGTCAG-3’; reverse, 5’-CGCTCTATAATCACTGGGATCTTGG-3’. The NRF2 primer sequences were as follows: forward, 5’-GTCGCCGCCCAGAACTGTAG-3’; reverse, 5’-AAGGTGCTGAGCCGCCTTTT-3’. The MACRO primer sequences were as follows: forward, 5’-TGGGCACCCAAAACACACCT-3’; reverse, 5’-TGGACCTGGAGAGCCTCGTT-3’; The MSR1 primer sequences were as follows: forward, 5’-CTGGGCAGAGCACCCTACTATC-3’; reverse, 5’-AAAAGGTGCCAGGGGATGGGA-3’. The primers were designed by Primer-BLAST (NCBI). RT-qPCR assays were conducted in triplicate using the SYBR green method on QuantStudio 5 Real-Time PCR System (Applied Biosystems) according to manufacturer’s instructions. β-actin was used as housekeeping control mRNA. Data were analyzed using the relative standard curve method according to the manufacturer’s protocol.
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10

Ginsenoside Rg1 Gelatin Scaffold Osteogenesis

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Ginsenoside Rg1 (>98%, Aladdin, China); Gelatin (Porcine skin, Type A, Sigma-Aldrich, United States); Span 80 (Aladdin, China); Olive oil (Aladdin, China); SrCl2⋅6H2O (Aladdin, China); Gibco MEM α, Nucleosides (Thermo Fisher Scientific, United States); Fetal bovine serum (FBS, Sigma-Aldrich, United States); Anti-Osteocalcin (Anti-OCN, Santa Cruz Biotechnology, United States); CCK-8 Kit (Beyotime, China); ALP Kit (Beyotime, China); RNeasy Mini Kit (Qiagen, United States); cDNA synthesis Kit (Beyotime, China); Bulge-LoopTM miRNA qRT-PCR kit (Ribobio, Guangzhou, China); Hematoxylin and Eosin Staining Kit (Beyotime, China); Masson’s Trichrome Stain Kit (MKbio, Shanghai, China); and Safranin O-Fast green Stain Kit (Servicebio, Wuhan, China).
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