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75 protocols using incucyte woundmaker

1

Inhibition-driven Wound Healing Assay

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DDLPS cells were plated in 96-well ImageLock plates (Essen Bioscience) at density of 1.6 × 104 cells per well in the presence of mitomycin C (1 μg/mL, received from Dr. Dario Palmieri) to inhibit proliferation. After 12 h, Incucyte WoundMaker (Essen Bioscience) was used to make a uniform scratch in all 96 wells simultaneously. After rinsing with PBS, cells were placed in IncuCyte Zoom for time-lapse live cell imaging every hour for 24 h. Incucyte Scratch Wound Cell Migration Software Module (Catalog No. 9600-0012) was used to apply a mask based on phase-contrast that analyzed the percentage of the wound infiltrated by the cells and determined the relative wound density (normalizing for initial density).
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Scratch Wound Healing Assay with IncuCyte

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NLF were plated in a 96-well IncuCyte imageLock plate (Essen BioScience). SFM was applied for 16 hr. Wells were then washed three times with PBS and a scratch was made using the IncuCyte WoundMaker (Essen Bioscience). Wells were washed three times with PBS and cancer cell CM or SFM were applied. The plate was placed in the IncuCyte system (Essen BioScience) for 48 hr. Images were analyzed using the IncuCyte software. Inhibition of proliferation was performed by adding 20 µg/ml mitomycin C (Sigma-Aldrich; M4287) to all wells during the scratch closure time.
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3

Hydrogel-Based Wound Healing Efficacy

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To investigate the wound healing efficacy of a hydrogel comprising LMWP-GFs, QCN-NE, and OXY-PFOB-NE, an in vitro scratch-wound recovery assay was performed. A total of 2.5×104 HaCaT or 4×104 CCD-986sk cells (in 200 µL DMEM with 10% [v/v] FBS and 1% [w/v] penicillin/streptomycin) was added to each well of a collagen-coated Essen ImageLock 96-well plate (Essen Bioscience, Ann Arbor, MI, USA), and incubated at 37°C for 48 h to produce confluent monolayers. Cell-free scratches 700–800-µm wide were created in the monolayers using a 96-pin IncuCyte wound-maker (Essen BioScience), and the detached cells were washed twice with PBS (pH 7.4). The HaCaT and CCD-986sk cells were further treated with 200 µL of hydrogel diluted with DMEM containing 0.5% FBS to apply LMWP-GFs (LMWP-EGF [500 ng/mL], LMWP-IGF-I [500 ng/mL], LMWP-PDGF-A [10 ng/mL], and LMWP-bFGF [10 ng/mL]), QCN-NE (equivalent to 0.1 µg/mL of QCN), and 30 µg/mL of OXY-PFOB-NE alone or combined. The plates with the HaCaT and CCD-986sk cells were incubated at 37°C in an IncuCyte FLR microscope (Essen Bioscience) for 12 h and 48 h, respectively, and wound recovery was quantified using IncuCyte FLR image analysis software, which detects cell edges and generates an overlay mask to calculate relative wound density.
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Wound Healing Assay for DLD1 Cells

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One hundred thousand DLD1 cells and 65,000 DLD/IP3R3_del cells per well were plated in octaplicates on ImageLock 96-well plates (Essen BioScience, UK), and let to adhere for 24 h. Confluent monolayers were then wounded with wound making tool (IncuCyte WoundMaker; Essen BioScience), washed twice and supplemented with fresh culture medium. Images were taken every 2 h for the next 48 h in the IncuCyte ZOOM™ kinetic imaging system (Essen BioScience). Cell migration was evaluated by IncuCyte ZOOM™ 2016A software based on the relative wound density measurements and expressed as means of octaplicates ± SEM.
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5

Wound Healing Assay in Endothelial Cells

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ECs were seeded at a density of 1 × 105 cells/well in a 96-well plate and grown for 24 hours until they were 100% confluent. The IncuCyte® WoundMaker (Essen BioScience, Ann Arbor, MI, USA) was used to create a wound in the middle of each well. The IncuCyte ZOOM® Live-Cell Analysis System (Essen BioScience, Ann Arbor, MI, USA) imaged ECs at time 0 and every 2 hours for 50 hours at 10X magnification. The IncuCyte Scratch Wound Cell Migration Software (Essen BioScience, Ann Arbor, MI, USA) was used to analyze the images.
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6

Cell Motility Quantification via Scratch Assay

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LV and RV C-MSC motility was assessed by scratch wound assay; 40,000 cells/cm2 were plated in the growth medium in three replicates. After cell attachment, wounds were created simultaneously in all wells, using IncuCyte WoundMaker (Essen BioScience). The IncuCyte live-cell analysis system (Essen BioScience) scanned the plate every 2 h for 60 h, and the percentage of the dish area occupied by cells was quantified.
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7

Quantitative Cell Migration Analysis

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U2OS cells were reversely transfected in IncuCyte ImageLock 96-well plates (Essen Bioscience) and grown into confluent monolayers before wounding with the IncuCyte WoundMaker (Essen Bioscience). Imaging was performed by using the IncuCyte ZOOM with a 10× objective (Essen Bioscience), and the relative wound density calculated by the IncuCyte ZOOM software analysis program. For individual cell tracking and analysis of cell speed, the Fiji/ImageJ manual tracking plugin and Ibidi Chemotaxis software was used.
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8

Wound Healing and Cell Migration Assay

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In a 96-well ImageLock plate (Essen Bioscience, Ann Arbor, MI, USA), 30,000 cells/well were seeded and were allowed to adhere to a nearly confluent monolayer. For the migration assay, the 96-well plate was coated with Matrigel (Corning Inc., New York, NY, USA) before cells were seeded. Scratch wounds were created according to the manufacturer’s instructions using the IncuCyte WoundMaker (Essen Bioscience, Ann Arbor, MI, USA). Wells were filled either with medium alone, with medium containing MK2206 and/or RAD001 or for the invasion assay, with medium containing Matrigel at a concentration of 8 mg/mL. Phase contrast pictures were taken automatically every 2 h by the IncuCyte Zoom live cell imaging system (Essen Bioscience, Ann Arbor, MI, USA). Wound closure was analyzed by creating a confluence and scratch mask with IncuCyte Zoom software (Essen Bioscience, Ann Arbor, MI, USA). Relative Wound Density was calculated automatically by the following equation: %RWD(t) =100· (w(t)  w(0))(c(t)  w(0)) w(t) = density of wound region at time (t); c(t) = density of cell region at time (t).
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9

Invasion Assay for cSCC Cells

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To study cell invasion in culture, cSCC cells were transfected with negative control and BRD3OS (LINC00094), MMP-1, or MMP-13 targeting siRNAs (75 nM) and cultured for 24 h. Transfected cells were plated on a collagen type I–coated (5 μg/cm2, PureCol; Advanced BioMatrix, San Diego, CA, USA) ImageLock 96-well plate (Essen Bioscience, Ann Arbor, MI, USA), and cells were allowed to adhere overnight. The cell monolayer was scratched using an Incucyte wound maker (Essen Bioscience), and collagen type I solution was added by mixing type I collagen (PureCol) with 5× Dulbecco’s Modified Eagle Medium and 0.2 mol/L HEPES buffer (pH 7.4) at a ratio of 7:2:1, respectively. Finally, 1 mol/L NaOH was added to obtain a final pH of 7.4. Collagen was allowed to polymerize for 2 h at 37 °C, and a cell culture medium with 0.5% fetal calf serum was added on top. The gap closure was imaged using the IncuCyte S3 real-time cell imaging system (Essen Bioscience), and the relative cell invasion was quantitated using the IncuCyte S3 software version 2020A (Essen Bioscience).
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10

Wound Healing, Migration, and Invasion Assays

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Cell migration was assessed with a wound-healing assay. The above cells were seeded at 3.5 × 104 density in 96-well plates, scratch wounds were made simultaneously in all culture wells at 12 h after seeding by using IncuCyte wound maker (Essen BioScience). Scratch wound results were compiled with six wells with one scratch in each well. For the trans-well chamber-based migration and invasion assays, 5 × 104 cells were loaded into an insert, provided with serum-free medium, and allowed to pass through a polycarbonate filter, which had been either pre-coated with 100 μl of matrigel (Becton Dickinson, San Jose, CA) for the invasion assay or left uncoated for the migration assay. The lower chambers were filled with DMEM and 10% FBS. Cells on the upper surface of the filters were wiped out after 24 h (migration assay) or 48 h (invasion assay). The membranes were fixed with methanol for 10 min and stained with 0.5% crystal violet for 10 min. The cells on the underside of the filter were counted in five randomly selected microscopic views.
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