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8 protocols using myd88

1

Mog Modulates Inflammatory Pathways

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Mog (HPLC > 98%) was obtained from Chengdu Pufei De Biotech Co., Ltd. (Chengdu, China; CAS:88901-36-4). The compound was dissolved in dimethyl sulfoxide (DMSO, 0.1% final concentration in cultural medium). DMSO, LPS (Escherichia coli Serotype 055:B5), and LY294002 (10 μM, AKT inhibitor) were purchased from Sigma Chemical Co. (St Louis, USA). 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) and phosphate-buffered saline (PBS) were supplied by Coolaber (Beijing, China). BCA were obtained from Beyotime Biotechnology (Shanghai, China). ECL chemiluminescence substrates were supplied from Millipore Corporation (Billerica, USA). COX-2, iNOS, TLR4, Nrf2 HMGB1, IL-1β, IL-18, NF-κB, p-NF-κB, MyD88, p-AKT, AKT, p-AMPK, AMPK, IL-6, and TNF-α were obtained from ABclonal Technology (Wuhan, China). Rabbit polyclonal antibodies against ERK (#4695), p-ERK (#4370), JNK (#9252), p-JNK (#4668), p38 MAPK (#8690), p-p38 (#4511), IκBα (#4814), and p-IκBα (#2859) were purchased from Cell Signaling Technology (Bossdun, USA). NQO1 (ab80588), HO-1 (ab68477), GCLC (ab207777), and GCLM (ab126704) were provided by ABCAm (Cambridge, United Kingdom). Dulbecco's modified Eagle's medium (DMEM) and trypsin were provided by Gibco (USA). Fetal bovine serum (FBS) was from Biological Industries (Uruguay, South America).
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2

Dextran Sulfate Sodium-Induced Colitis Model

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Dextran sulphate sodium (DSS, purity ≥98 %) was purchased from Meilun Biotechnology Co., Ltd, Dalian, Liaoning, China. Fxt (purity ≥98 %) was purchased from Chengdu Herbpurify Co., Ltd, Chengdu, Sichuan, China.
The BCA protein concentration assay kit and RIPA buffer were purchased from Beyotime, Shanghai, China. Electrochemical luminescence (ECL) was purchased from Vazyme, Nanjing, China. TNF-α, IL-1β, IL-6 and IL-10 ELISA kits were purchased from Nanjing JianCheng Institute of Biological Engineering, Nanjing, China. TLR4, MyD88, p–NF–κB p65, NF-κB p65, NLRP3, β-actin, and HRP goat anti-rabbit IgG were purchased from ABclonal Technology Co., Ltd., Wuhan, China. Occludin and ZO-1 were purchased from Cell Signaling Technology, Danvers, MA, USA. All other chemicals were of analytical grade.
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3

Molecular Mechanisms of Neuroinflammation

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DMEM was purchased from Hyclone (Beijing, China). Fetal bovine serum (FBS) was purchased from BI (Israel). Griess reagent was purchased from Beyotime (Shanghai, China). LPS, RIPA buffer, and CF3COOH (TFA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Rabbit antibodies against mouse iNOS, COX-2, Tau, p-Tau, IBA-1 TREM2, DAP12, TLR4, MyD88, Caspase-1, and NLRP3 were obtained from Abclonal (Wuhan, China). HPLC-grade methanol and acetonitrile were supplied from Merck KGaA (Darmstadt, Germany). PBS, CM5 sensing chips were obtained from from GE Healthcare (Sweden). HP-20 macroporous resin was purchased from Mitsubishi Chemical Company (Japan).
An ultrasonic cleaner, high-speed freezing centrifuge, and electric heater were obtained from Branson (EYELA, Tokyo, Japan), and Biacore T200 (GE Healthcare, Sweden). The Xevo G2-XS Qtof was acquired from Waters Inc (Milford, USA.). Deionized water was collected from a Milli-Qwater purification system (Merck KGaA, Darmstadt, Germany). The rotavapor tandem cold trap was from EYELA (EYELA, Tokyo, Japan). The Epoch 2 microplate reader was got by BioTek (USA). The Electrophoresis Device and scanning imager were acquired from BIO-RAD.
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4

Ruminal Epithelial Protein Extraction and Western Blot Analysis

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Total protein from ruminal epithelial cells was extracted using RIPA lysis buffer and quantified using a BCA Protein Assay kit (P0012, Beyotime Biotechnology, China). Protein was separated by SDS-PAGE on 10% gels and transferred to PVDF membranes. Then the membrane was Blocking with 5% skimmed milk or BSA in TBST buffer for 2 h, and followed incubated with TLR4 (ab217274, abcom, Cambridge, the United Kingdom), MyD88 (A0980, Abclonal, Wuhan, Chian), p-p65 (AF2006, Affinity, Jiangsu, China), p65(AF5006, Affinity, Jiangsu, China), p-IκB (9246S, Cell Signaling Technology, Danvers, MA, USA), IκB(4814S, Cell Signaling Technology, Danvers, MA, USA ). antibodies overnight at 4°C, subsequently incubated for 2 h at room temperature with secondary antibodies. The target bands were detected using the chemiluminescence (ECL) system and analyzed using the ImageJ software (Media Cybernetics, Bethesda, MD, United States).
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5

Western Blot Analysis of NLRP3 Inflammasome

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Total protein was extracted from nasal mucosa using RIPA lysis buffer and PMSF. Protein concentration was determined using the Bicinchoninic acid (BCA) Protein Assay kit (Solarbio, Beijing, China). Equal amount of protein (10–20 µg) from each sample was isolated using SDS-PAGE (8%, 12%, and 15% gel) and transferred to the polyvinylidene difluoride (PVDF) membranes. After blocking with 5% nonfat milk for 1 h at room temperature, the membranes were incubated with primary antibodies at 4°C overnight, followed by the incubation of horseradish peroxidase (HRP)-conjugated secondary antibodies (1:3,000, Solarbio) for 1 h at 37°C. Subsequently, the membranes were visualized with electrochemiluminescence (Solarbio) for luminescence generation. GAPDH served as inner control for normalization. The primary antibodies used in present study were: the nucleotide binding and oligomerization domain-like receptor family pyrin domain-containing 3 (NLRP3, 1:1,000, ABclonal, Wuhan, China), apoptosis-associated speck-like protein containing a caspase-recruitment domain (ASC, 1:1,000, ABclonal), cleaved caspase-1 (1:500, ABclonal), IL-1β (1:1,000, ABclonal), TLR4 (1:1,000, ABclonal), MyD88 (1:1,000, ABclonal), p65/p-p65 (Ser536) (1:1,000, Affinity, Cincinnati, OH, USA), GAPDH (1:10,000, Proteintech, Wuhan, China), and Histone H3 (1:1,000, GeneTex, San Antonio, TX, USA).
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6

Protein Extraction and Western Blot Analysis

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Total, cytosolic, and nuclear proteins were extracted from tissues or cell samples using a total protein extraction kit and a nuclear/cytoplasmic extraction kit (Beyotime, China). Western blot analysis was performed as previously described, with some modifications.25 (link) Proteins were separated by SDS-PAGE and transferred onto polyvinylidene fluoride membranes, which were blocked in 5% nonfat milk for 2 h at 37 °C and incubated in the presence of primary antibodies (1:1000 dilution) overnight at 4 °C. The following day, the membranes were washed 4 times with 1× Tris-buffered saline containing 0.5% Tween-20 and incubated with secondary antibodies for 4 h at 4 °C. Finally, all membranes were washed 4 times, after which the blots were visualized using enhanced chemiluminescence (Beyotime). Total protein was used to determine TLR4, MyD88, RAGE, NLRP3, GSDMD/GSDMD-N, caspase-1/cleaved caspase-1, and caspase-11/cleaved caspase-11 expressions (ABclonal Technology Co, Ltd, Wuhan, China). The expression of the NF-κB/P65 (CST, Inc, MA) subunit was measured in cytosolic and nuclear proteins. The Image-Pro Plus software (version 6.0) was used for protein band quantification.
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7

Molecular Signaling Pathway Analysis

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Microplate reader (MB16-414, New York, NY, USA), real-time PCR instrument (Bio-Rad CFX96Touch, California, CA, USA), electrophoresis and transfer tank, fluorescence microscope (Nikon Eclipse Ti-SR, Tokyo, Japan), imaging system (Nikon DS -U3, Tokyo, Japan), high-speed tissue homogenizer (T10 Basic, Bartlesville, OK, USA).
Rabbit anti-polyclonal antibody TLR4 (ABclonal, Boston, MA, USA), MyD88 (ABclonal, Boston, MA, USA), NF-κB (ABclonal, Boston, MA, USA), β-actin and goat anti-rabbit secondary antibody (Wuhan Google Biotechnology Co., Ltd. Wuhan, China), DAB chromogenic reagent (DAKO, Glostrup, Denmark), miR-223 primer (Ribobio, Guangzhou, China), TLR4, MyD88, NF-κB (Shanghai Shenggong, Shanghai, China), reverse transcription kit (TAKARA Bio, Los Angeles, USA), mouse IL-1β, IL10 ELISA kit ( ABclonal, Boston, MA, USA).
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8

Protein Expression Analysis of HSV-1 Infection

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The vaginal and vulvar tissues were homogenized in RIPA lysis buffer with protease and phosphatase inhibitors. The concentration of total protein was determined using the BCA kit (Servicebio, Wuhan, China). The loading buffer was added to the extracts, followed by boiling for 10 min. The proteins were separated by 8–12% SDS-PAGE and transferred to a nitrocellulose membrane (Merck Millipore, Billerica, MA, United States). The membrane was sealed in skim milk and then incubated with primary antibodies against gD, ICP5, VP16, Nectin-1, Nectin-2, HVEM, TLR3, TLR9 (Abcam, Cambridge, United Kingdom), TLR4, TLR7 (Absin, Shanghai, China), MyD88 (ABclonal, Wuhan, China), IκBα, and P-IκBα (CST, Danvers, MA, United States) and secondary antibody (LI-COR, Lincoln, NE, United States). Finally, the Odyssey instrument (LI-COR, Lincoln, NE, United States) was used to acquire images on 700 or 800 nm channels.
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