The largest database of trusted experimental protocols

25 protocols using kt5823

1

Dissolving Compounds for Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
YC-1 (Sigma-Aldrich) was dissolved in dimethyl sulfoxide (DMSO; Sigma-Aldrich). KT5823 (Sigma-Aldrich) was dissolved in ethyl acetate (Kanto Chemical Corporation, Tokyo, Japan).
+ Open protocol
+ Expand
2

Preparation of Pharmacological Reagents

Check if the same lab product or an alternative is used in the 5 most similar protocols
Buffer reagents, 8-Br-cAMP, 8-Br-cGMP, chelerythrine, Fura 2-AM, KT5823, KT5720, phorbol 12-myristate 13-acetate (PMA), and thapsigargin were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Unless specified otherwise, all drugs and reagents were dissolved in distilled water. Fura 2-AM, KT5720, KT5823, PMA, and thapsigargin were dissolved in DMSO at 10 mM; KMUP-1 was dissolved in 10% absolute alcohol, 10% propylene glycol, and 2% 1N HCl at 10 mM. Serial dilutions were performed in phosphate buffer solution, with the final solvent concentration < 0.01%.
+ Open protocol
+ Expand
3

Cone Degeneration Protection using PKG Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Two PKG inhibitors, KT5823 (Sigma Aldrich, St Louis, MO) and (Rp)-8-Br-cGMPS (Santa Cruz Biotechnology, Dallas, TX), were used. (Rp)-8-Br-cGMPS is a cyclic nucleotide analog (an Rp-diastereomer of cGMP), whereas KT5823 is a K-series inhibitor that inactivates the ATP-binding site through competition with ATP (44 (link)). These two compounds have been shown to reduce PKG activity in CNG channel-deficient mice and reduce ER stress/cone death (21 (link)). Starting at postnatal day 7 (P7), Cnga3−/−/Nrl−/− mice received intraperitoneal injection of KT5823 (1.0 μmol/kg body weight/day), (Rp)-8-Br-cGMPS (5.0 μmol/kg body weight/day), or vehicle for 9 days, as described previously (21 (link)). At the end of the treatment, retinas were collected for biochemical evaluations.
+ Open protocol
+ Expand
4

Patch Clamp Recordings of K+ Currents

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recordings were obtained, using a whole-cell patch clamp with an Axopatch 200B Patch Clamp Amplifier (Axon Instruments, Union City, CA, USA) at room temperature. The pCLAMP 9.0 software (Axon Instruments) was used for data acquisition and analysis of whole-cell currents. Activated currents were filtered at 2 kHz and digitized at 10 kHz. Recording patch pipettes were prepared from filament-containing borosilicate tubes (TW150F-4; World Precision Instruments, Sarasota, FL, USA), using a two-stage microelectrode puller (PC-10; Narishige, Tokyo, Japan), and were then fire polished on a microforge (MF-830; Narishige). When filled with pipette solution, the pipettes exhibited a resistance of 2–3 MΩ.
The bath solution to record KV currents contained (in mM): 150 NaCl, 5.4 KCl, 1 CaCl2, 1 MgCl2, 10 glucose, and 5 HEPES (pH adjusted to 7.35 with NaOH). The pipette solution contained (in mM): 130 KCl, 1 CaCl2, 2 MgCl2, 10 HEPES, 10 EGTA, and 2 Mg-ATP (pH adjusted to 7.3 with KOH). TEA, 4-AP, SNAP, KT5823, ODQ, 8-Br-cGMP, KT5720, SQ22536, 8-Br-cAMP, and all other chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
5

Pharmacological Modulators of Ion Channels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tetraethylammonium (TEA) was purchased from Santa Cruz Biotech, California, USA. Iberiotoxin was purchased from Alomone, Jerusalem, Israel. Glibenclamide was purchased from Research Biochemical International, Massachusetts, USA. Tetrodotoxin (TTX) was purchased from Tocris Bioscience, Bristol, UK. ω-conotoxin GVIA (CTX) was purchased from Bachem, Bubendorf, Switzerland. KT 5720, KT 5823, NG-Nitro-L-arginine (L-NNA), apamine, papaverine, and resveratrol were obtained from Sigma-Aldrich, Missouri, USA. Charybdotoxin was purchased from AnaSpec Inc., California, USA.
+ Open protocol
+ Expand
6

Preparation and Administration of Pharmacological Agents

Check if the same lab product or an alternative is used in the 5 most similar protocols
Drugs were obtained from the following sources: Glibenclamide (GLB) and KT5823 were obtained from Sigma Aldrich (St Louis, MO, USA). 1H-[1,2,4]oxadiazolo[4,3,-a]quinoxalin-1-one (ODQ) was purchased from Calbiochem (San Diego, CA, USA). AS was synthesized and used as previously described [40 (link)]. The stability of stock solutions prepared in 10 mM NaOH and stored at 20°C was determined from the extinction coefficient at 250 nm (ε of 8000 M−1 cm−1 for AS) [41 (link)]. AS was prepared at 7 mg/ml of 10 mM NaOH; ODQ were diluted in dimethylsulfoxide (DMSO) 2% in saline, KT5823 in DMSO 2% or GLB in Tween 80 5%. AS, ODQ, KT5823 or GLB solutions were re-diluted in sterile saline for in vivo administration.
+ Open protocol
+ Expand
7

Wnt/β-Catenin Signaling Pathway Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tadalafil and vardenafil were obtained from Selleckchem (Houston, TX, USA).
KT5823, 8-Br(Bromo)-cGMP, Alizarin Red S, and SB216763 were from Sigma (St Louis,
MO, USA). Recombinant murine Wnt3a protein was purchased from R&D System
(Minneapolis, MN, USA). Antibodies against PKG1, PKG2, Lamin B, Dkk1, IgG,
β-actin, and protein A/G PLUS-Agarose were from Santa Cruz
Biotechnology (Santa Cruz, CA, USA). Antibodies against p-β-cat
(Ser33/37/Thr41), p-β-cat (Ser45), β-cat,
p-GSK3β (Ser9) and GSK3β were from Cell Signaling
(Danvers, MA, USA). Antibodies against AP and RunX2 were purchased from Abcam
(Cambridge, UK), and the antibody against Lef1 was from Proteintech (Chicago, IL,
USA). The IRDye 680 and 800 second antibodies were from LI-COR Bioscience
(Lincoln, Nebraska) and the Alexa 555-conjugated secondary antibodies were from
Life Technologies (Grand Island, NY, USA). Cyclic GMP Direct Immunoassay kits were
obtained from Abcam and TRAP staining kits were from Sigma.
+ Open protocol
+ Expand
8

Autophagy Regulation Signaling Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
3‐methylamphetamine (M9281), rapamycin (37094), SB216763 (S3442), and KT‐5823 (K1388) were purchased from Sigma‐Aldrich (St. Louis, MO, USA); antibodies were used against light‐chain 3B (LC3B; Aviva Systems Biology Cat# ARP51335_P050, https://scicrunch.org/resources/Any/search?q=AB_2044956&l=AB_2044956), Beclin 1 (Novus Cat# NB500‐249B, https://scicrunch.org/resources/Any/search?q=AB_1216268&l=AB_1216268), GSK‐3β (Cell Signaling Technology Cat# 12456, https://scicrunch.org/resources/Any/search?q=AB_2636978&l=AB_2636978), phospho‐GSK‐3β (Ser9; Cell Signaling Technology Cat# 14310, https://scicrunch.org/resources/Any/search?q=AB_2798445&l=AB_2798445), phospho‐GSK‐3β (Tyr216; Abcam, Cat# 75745), SQSTM1/p62 (Cell Signaling Technology Cat# 5114, RRID:AB_10624872), APG5L/ATG5 (Abcam Cat# ab109490, https://scicrunch.org/resources/Antibodies/search?q=AB_10861245&l=AB_10861245), https://scicrunch.org/resources/Antibodies/search?q=AB_1063421&l=AB_1063421 (LifeSpan Cat# LS‐C42463‐50, RRID:AB_1063421), https://scicrunch.org/resources/Antibodies/search?q=AB_10800793&l=AB_10800793 (LifeSpan Cat# LS‐C121392‐50, RRID:AB_10800793), https://scicrunch.org/resources/Antibodies/search?q=AB_2263076&l=AB_2263076 (Proteintech Cat# 10494‐1‐AP, RRID:AB_2263076), and β‐actin (Proteintech, Cat# 60008‐1‐Ig).
+ Open protocol
+ Expand
9

Pharmacological Modulators of Cellular Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
KT-5823, SNAP, carboxy-PTIO and 1H-[1 (link),2 (link),4 (link)]Oxadiazolo[4,3-a]quinoxalin-1-one (ODQ) were from Sigma (St. Louis, MO). LY-83583 and BAY-60-7550 were from Santa Cruz Biotechnology (Santa Cruz, CA). ODQ, LY-83583 and BAY-60-7550 were dissolved in dimethyl sulfoxide (DMSO). To ensure that the channel activity was not affected by DMSO, its final concentration in the bath was less than 0.1%.
+ Open protocol
+ Expand
10

NECA-Induced Cardioprotection Against Oxidative Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed twice with phosphate-buffered saline (PBS) and then incubated in Tyrode solution for 2 hours (h) before experiments. To examine the effect of NECA (Tocris, UK) on mitochondrial membrane potential, GSK-3β phosphorylation (at Ser9), and GRP94, cells were exposed to 800 μM H2O2 (Sigma, USA) for 20 minutes (min) to cause oxidant damage. A range concentrations of NECA (0.1–10 μM) were given 10 min before exposing to H2O2. In the study exploring roles of ERS and the cGMP/PKG signaling pathway in NECA-induced cardioprotection against oxidative damage, cells were exposed to 0.1 μM NECA/20 mM 2-DG (Sigma, USA)/0.1 μM KT5823 (Sigma, USA) for 20 min. The 2-DG and KT5823 were applied for 10 min before the cells were exposed to NECA.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!