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Axioskop upright microscope

Manufactured by Zeiss
Sourced in Germany

The Axioskop is an upright microscope designed for a wide range of applications in life sciences and materials research. It features a stable, ergonomic design and offers high-quality optical performance. The microscope is equipped with a range of illumination options and can be configured with various objectives to accommodate different sample types and magnification requirements.

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10 protocols using axioskop upright microscope

1

Microscopy Techniques in Biomedical Research

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Phase contrast microscopy was performed using Leica, Zeiss, and EVOS (Life Technologies) inverted fluorescence microscopes. Image analysis and manipulation was performed with ImageJ and GIMP. Histological sections were imaged on a Zeiss Axioskop upright microscope. Confocal microscopy was performed using a Leica SPE microscope.
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2

Quantifying Tumor Cell Proliferation and DNA Damage

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Formaldehyde-fixed paraffin-embedded (FFPE) tumor sections were stained with hematoxylin and eosin (H&E). Immunohistochemistry for Ki-67 was performed with clone SP6 (Lab Vision), ImmPRESS-AP (Vector Laboratories), Warp Red Chromogen Kit (Biocare Medical) and hematoxylin for counterstaining. H&E and Ki-67 imaging was conducted using an Axioskop upright microscope with a 10×/0.3NA objective, Axiocam digital color CCD camera and Zen imaging software (Zeiss). Immunofluorescence for γ-H2AX was performed using clone JBW301 (EMD Millipore) and imaged with an Axiovert 200M inverted fluorescence microscope with a 40×/1.3 NA objective (Zeiss), a CCD camera (Hamamatsu), and SlideBook imaging software (3i). ImageJ software (NIH) was used to prepare images for publication. A representative tumor sample from each group was selected for analysis. Additional detail is provided in Supplementary Methods.
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3

Cell Staining Protocols for Microscopy

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Cells in initial experiments (Fig. 1A, B) were stained using a method similar to Wright-Giemsa (PROTOCOL™ Hema 3™; Fisher Scientific, Kalamazoo, MI) by submerging slides in a methanol-based fixative for 90 sec, “Solution I” for 120 sec, “Solution II” for 30 sec, and water for 90 sec. Cells in remaining experiments were stained with HCS NuclearMask Blue followed by CellMask Orange Plasma Membrane according to manufacturer (Thermo Fisher) recommendations. When necessary, FluorSave™ (Calbiochem, MilliporeSigma, Burlington, MA) medium was used to mount coverslips on slides. Images for MGC quantification were collected using a routine transmitted light and epifluorescent Zeiss Axioskop upright microscope with AxioCamMR3 camera (Carl Zeiss, Jena, Germany) at 200x magnification with DAPI and TRITC filters. At least five random, independent (non-overlapping) images were acquired per sample chamber. Fluorescent images used to illustrate differences among staining methods (Fig. 1C, D) were collected using an Olympus FluoView FV1000 IX81 confocal microscope.
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4

Cytospin-based Cell Staining Protocol

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Sorted cells were mounted on superfrost slides using a Cytospin centrifuge (Cytospin 4; Thermo Fisher Scientific) operating for 5 min at 500 rpm. Cells were fixed with ice-cold methanol and stored at room temperature. Cells were subsequently stained with hematoxylin and acidic eosin and mounted with DPX. Images were collected on an Axioskop upright microscope (ZEISS) using a 100× objective and captured using a CoolSNAP ES camera (Photometrics) through MetaVue software (Molecular Devices). Images were then analyzed and processed using ImageJ (National Institutes of Health) and Image-Pro Premier software (Media Cybernetics).
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5

Appressorium Formation Assay on Polystyrene and Onion

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Germination and appressorium formation were assayed on polystyrene and on onion epidermis. Ten-μL droplets of washed macroconidia (see above) containing 100 and 1000 spores were inoculated onto 90-mm polystyrene Petri dishes (Greiner Bio One) and the hydrophobic face of onion epidermal strips, respectively. After incubation for 24 h in a humid chamber at 23°C in darkness, infection structures were counted by phase contrast microscopy using an Axiovert 40 CFL inverted microscope (Carl Zeiss, Jena, Germany) equipped with a 10 x / 0.25 Ph1 objective for germination assays on polystyrene and an Axioskop upright microscope (Zeiss) equipped with a 20 x / 0.45 Ph 2 objective for germination assays on onion epidermis.
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6

Cubosome Nanoformulations' Impact on HeLa Cells

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In vitro cultures of human cells may deliver improved understanding of the reactions of a particular cell type to specific drugs. Following the procedure mentioned above, confluent HeLa cell cultures were obtained.
Nanoformulations of (coated and uncoated) cubosomes (CIS, PAX, and DUAL) were added to the cell culture at the ratio of 1:1000 as was demonstrated by Murgia et al.17 (link) (2 µl of cubosomal solutions were added to 2 ml of media containing cells). Cell Explorer™ fluorescence imaging kits (Biochem Life Sciences, India) was used for staining the HeLa cells. This specific kit is intended to consistently stain live HeLa cells in green fluorescence for comparatively extended time. The cells were fixed to preserve the pattern of imaging. The kit utilizes a nonfluorescent dye that becomes intensely fluorescent upon entering into live cells. This gives the live HeLa cells a stable fluorescence signal for moderately lengthier time period. This dye consists of hydrophobic molecules which easily permeates live cells. Observations were made using a Zeiss (Axioskop) upright microscope (Zeiss, Germany). Cellular fluorescence intensity was determined by ImageJ software. The fluorescent intensity of ten cells in the image were measured, and mean was calculated to determine mean fluorescent intensity.
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7

Macrophage-Multinucleated Giant Cell Quantification

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Samples of macrophage-enriched and MGC-enriched populations were cytocentrifuged and stained using a method similar to Wright-Giemsa (PROTOCOL™ Hema 3™; Fisher Scientific, Kalamazoo, MI) by submerging slides in a methanol-based fixative for 90 s, “Solution I” for 120 s, “Solution II” for 30 s, and water for 90 s. At least five random, independent (non-overlapping) images were acquired per sample using a Zeiss Axioskop upright microscope with AxioCamMR3 camera (Carl Zeiss, Jena, Germany) at 100× magnification. MGC were defined morphologically as containing three or more nuclei within a common cytoplasm. MGC quantification results are expressed as percent fusion by dividing the number of nuclei within MGC by the total macrophage and MGC nuclei, then multiplying by 100. Alternatively, a purity index was calculated by dividing the number of MGC by total cells.
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8

Histological Evaluation of Kidney Tissues

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Fresh native and decellularized kidney tissues were fixed in 10% neutral-buffered formalin (Thermo Scientific, #5701) for at least 48 hours before paraffin embedding, sectioning, and routine hematoxylin and eosin staining. After staining, coverslips were mounted with Cytoseal XYL (Thermo Scientific, #8312-4). Slides were imaged on a Zeiss Axioskop upright microscope with a Zeiss AxioCam MRc5 camera.
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9

Multimodal Microscopy Imaging Protocol

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Images were acquired on a 3i Marianas spinning disk confocal microscope (Intelligent Imaging Innovations, Inc., Denver, CO, USA) based on a Zeiss Axio-Observer 7 inverted microscope. A 63X/NA = 1.4 objective was used. DAPI was excited with a 405nm laser and detected with a 445/45 emission lter (445nm center wavelength, 45nm bandwidth), while PHM647 was excited with a 637nm laser and detected through a 692/40 emission lter. The imager was a Photometrics Prime 95B sCMOS camera. The system was controlled using Slidebook6 software.
The images of c-banded chromosomes following sorting were acquired using a Zeiss Axioskop upright microscope with 100x/NA = 1.4 oil objective and a monochrome Bassler acA2400 camera. The images were acquired using GenAsis software (Applied Spectral Imaging, Carlsbad, CA, USA).
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10

Spinal Cord Imaging and Analysis

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Slices were imaged on a Zeiss Axioskop upright microscope with 2.5× and 10× objectives. Processing was performed using the tools available in the open source image analysis package FIJI (Schindelin et al., 2012) (link). All images were aligned to a line from the gracile fasciculus through the central canal to the ventral fasciculus with the dorsal side facing up. The contours of the white matter, the grey matter and any lesions present in the slice were manually tracked in FIJI using the multipoint selection tool, resulting in a table of coordinates. These coordinates were loaded by a custom script written in R (R Core Team, 2014) and converted into areas for which both the absolute surface and for each lesion its area relative to the white matter was calculated. All images from a single animal were aligned according to their position in the paraffin block and matched by eye with the corresponding element from the reference series to determine the spinal cord segment.
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