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6 protocols using anti pd l1 e1l3n

1

Immunoprecipitation and Western Blot Analysis

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For protein immunoprecipitation (i.p.), the following antibodies were used: mouse monoclonal anti-Ac-lysine (AKL5C1) (sc-32268, Santa Cruz Biotechnology) and rabbit polyclonal anti-PD-L1 (E1L3N) (13684, Cell Signaling).
The following antibodies were used to evaluate protein expression: rabbit polyclonal anti-PD-L1 (E1L3N) (1:500) (13684, Cell Signaling Technology), mouse monoclonal anti-TRAPPC4 (C-7) (1:100) (sc-390551, Santa Cruz Biotechnology) and rabbit polyclonal anti-acetyl-Histone H3 (Lys27) (1:500) (4353, Cell Signaling). (Mouse monoclonal anti-β-actin (1:10,000) (Sigma Aldrich) and rabbit polyclonal anti-Lamin A/C (1:1000) (20 32, Cell Signaling Technology) were used as loading controls. Goat anti-mouse IgG-HRP (1:20,000) (Bethyl Laboratories, A90-116P) and goat anti-rabbit IgG-HRP (1:20,000) (Bethyl Laboratories, A120-101P, Montgomery, TX, USA) were used as secondary antibodies. All primary and secondary antibodies were diluted in a PBS + 0.1% Tween20 solution containing 3% BSA (SERVA, Reno, NV, USA).
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2

Immune Cell Marker Antibody Protocol

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Anti-RIPK3 (ab72106), anti-MLKL (ab184718), anti-pMLKL (ab187091), and anti-FOXp3 (ab20034) were purchased from Abcam (Cambridge, UK); anti-PD-L1 (E1L3N) was obtained from Cell Signaling Technology (Danvers, Massachusetts, USA); anti-RIPK1 (610459) was bought from BD Biosciences (San Jose, California, USA); anti-CD8 (M7103) was purchased from Dako (Agilent) (Santa Clara, California, USA); and anti-CD163 (NCL-L-CD163) was purchased from Leica Biosystems (Wetzlar, Germany).
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3

Western Blot Analysis of MET, JAK, and STAT Signaling

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Sub-confluent cells were lysed in Laemmli buffer (LB) and 45 µg of total proteins were subjected to SDS-PAGE and western blotting following standard methods. Protein detection was performed by using the following primary antibodies, diluted as indicated: anti-human MET (3D4, 1:3000, Invitrogen Corp., Camarillo, CA), anti-pMET Tyr1234/1235 (D26, 1:1000), anti-JAK1 (6G4, 1:1000), anti-pJAK1 Tyr1022/1023 (1:1000), anti-JAK2 (D2E12, 1:1000), anti-pJAK2 Tyr1007/1008 (1:1000) anti-STAT1 (1:1000), anti-pSTAT1 Tyr701 (58D6, 1:1000), anti-PD-L1 (E1L3N, 1:1000), anti-GAPDH (D4C6R, 1:1000) (all from Cell Signaling Technology, Beverly, MA), anti-IFNGR1 (EPR7866, 1:1000, Abcam, Cambridge, UK) and anti-Vinculin (hVIN-1, 1:1000, Sigma Life Sciences). Secondary HRP-conjugated goat anti-mouse IgG (1:20,000) or anti-rabbit IgG (1:20,000) (from Jackson ImmunoResearch, Cambridge, UK) and ECL System (Promega, Madison, WI) were used for protein detection.
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4

Quantitative Immunohistochemistry for Immune Markers

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CD3 and CD8 IHC was carried out as previously described.43 In brief, anti-CD3 2GV6 (Ventana, 790–4341) and anti-CD8 C8/144B (Dako, M7103) were quantified using image analysis. Anti-PD-L1 E1L3N (Cell Signaling Technologies, 13684) was evaluated by a pathologist determining frequency and staining intensity on the membrane of tumour cells and the percentage of PD-L1+ immune cells (macrophages, dendritic cells, and lymphocytes).44 Anti-ATM antibody Y170 (Abcam, ab32420), anti-HER2 (PATHWAY® HER-2/neu (4B5 (Ventana Medical Systems) and anti-NCL-L-MLH1 (Novocastra, Leica) were quantified via pathology (scoring (please see supplementary methods).
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5

Immunohistochemical Analysis of Diffuse Large B-Cell Lymphoma

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TMAs were sectioned at a thickness of 4-μm and stained with Benchmark XT and Benchmark ULTRA (Roche Diagnostics) along with normal tonsil specimens as controls for the following antibodies (clones): anti-Bcl-2 (std32, 1:50, Dako), anti-Bcl-6 (std32, ready-to-use, Ventana), anti-CD10 (std32, ready-to-use, Ventana), anti-Mum-1 (mild32, 1:150, Dako), anti-PD-L1 (E1L3N, 1:100, Cell Signaling) and anti-pSTAT3 (#9131, 1:20, Cell Signaling). Using immunochemistry results, the Hans algorithm was applied to each case as described previously [31 (link)].
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6

Immunohistochemical Analysis of PD-1, PD-L1, CD3, and CD8 in FFPE Tissue Sections

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Formalin-fixed paraffin-embedded (FFPE) tissue sections of 3 µm thickness were used for the immunohistochemical analyses. Staining for PD-1 and PD-L1 was conducted with anti-PD-1 (SP269, 1:50; Spring Bioscience) and anti-PD-L1 (E1L3N, 1:100; Cell Signaling Technology) antibodies, using a BOND-III stainer (Leica Biosystems). Staining for CD3 and CD8 was conducted with anti-CD3 (LN 10, 1:200; Novocastra) and anti-CD8 (SP16, 1:400; Thermo Scientific) antibodies using a Lab Vision Autostainer 480 (ImmunoVision Technologies Inc.). Signal visualization was done by diaminobenzidine, and sections were counterstained with haematoxylin. The slides were scanned with a NanoZoomer-XR (Hamamatsu Photonics) at 20× magnification (Figure 2).
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