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18 protocols using akr j

1

Mouse Strains for PTR Studies

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The PTR studies in mice were performed as described previously,34 (link) using multiple strains from Jackson Labs (Bar Harbor, ME, USA): KK/HIJ, LG/J, AKR/J, FVB/NJ, C3H/HeJ, DBA/2J, NOD/ShiLtJ, 129X1/SvJ, 129S1/SvImJ, A/J, BTBR/T+ tf/J, Balb/cByJ, C57Bl/6J. UbiC-GFP male mice, on a C57BL/6 background, were bred to FVB/NJ females in the Bloodworks NW Research Institute Vivarium (Seattle, WA, USA) and offspring were used as transfusion recipients at 24–28 weeks of age.34 (link)
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2

Generating Mutant Mouse Models

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Animals were housed in vivariums at the Schepens Eye Research Institute and the Nebraska Medical Center. C57BL/6J and AKR/J mice were obtained from Jackson Laboratories, Bar Harbor, ME. B6.Cg-Nr2e3rd7/rd7 has been previously described [40] (link). B6.Cg-Mor7AKR:Nr2e3rd7/rd7 mice were generated by outcrossing B6.Cg-Nr2e3rd7/rd7 × AKR/J F2 mice to C57BL/6J, followed by backcrossing of the F2 progeny to C57BL/6J for six consecutive generations. Genotyping for the Nr2e3rd7/rd7 mutation was performed as previously described [38] (link).
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3

Mouse Strain Characterization for Immunology

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A total of 23 mouse strains (129X1/SvJ, A/J, AKR/J, B10.S-H2s/SgMcdJ (B10.S), BALB/cJ, BPL/1J, BPN/3J, C3H/HeJ, C57BL/6J, C57BL/10J, CBA/J, CZECHII/EiJ, DBA/1J, DBA/2J, FVB/NJ, JF1/MsJ, MOLF/EiJ, MRL/MpJ, NOD/ShiLtJ, NU/J, PWD/PhJ, PWK/PhJ, SJL/J and SWR/J were purchased from the Jackson Laboratory (Bar Harbor, ME). All mice, including B10.S-HisthSJL and B10.S-HisthSJL ISRC lines, were generated and maintained under specific pathogen-free conditions in the vivarium of the Given Medical Building at the University of Vermont according to National Institutes of Health guidelines. All animal studies were approved by the Institutional Animal Care and Use Committee of the University of Vermont.
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4

Mouse Diversity Panel Protocol

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Thirty-six male inbred mouse strains (129S1/SvImJ, 129X1/SvJ, A/J, AKR/J, BALB/cByJ, BTBR T+Itpr3tf/J, BUB/BnJ, C3H/HeJ, C57BLKS/J, C57BL/6J, C57BR/cdJ, C58/J, CBA/J, CZECHII/EiJ, DBA/2J, FVB/NJ, I/LnJ, KK/HiJ, LG/J, LP/J, MA/MyJ, NOD/LtJ, NON/LtJ, NZB/BINJ, NZO/HiLtJ, NZW/LacJ, PERA/EiJ, PL/J, PWD/PhJ, PWK/PhJ, RIIIS/J, SEA/GnJ, SJL/J, SM/J, SWR/J, and WSB/EiJ), aged 10–12 weeks, were obtained from The Jackson Laboratory (Bar Harbor, ME, USA). This panel of isogenic mice was chosen based on priority strains from the Mouse Diversity Panel.26 (link) Four mice were used per strain. Male mice were housed four per cage in polycarbonate cages on a 12-hour light/dark cycle (lights on at 7 am), with access to food and water ad libitum. All procedures were approved by the Institutional Animal Care and Use Committee and followed the guidelines set forth by the National Institutes of Health (NIH) Guide for the Care and Use of Laboratory Animals.
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5

Body Composition Analysis in Mice

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All in vivo experiments were carried out with male A/J,
C57BL/6J, AKR/J, DBA/2J, 129SVImJ and (B6 × DBA/2J)F1 mice purchased
from the Jackson Laboratory (Bar Harbor, ME). Mice were maintained in a
temperature-controlled room (23°C) with a 12-h light/12-hr dark cycle.
The mice were reared under conventional conditions and fed PicoLab Rodent Diet
20 (Lab Diet; 13% kcal fat) until 16 weeks of age. A subset of mice was fed high fat diet (D12331; 58 kcal% fat) for 8 weeks (8–16 weeks of age). Body composition (body fat, lean mass and free fluid) was
analyzed by Minispec NMR (Bruker) which uses the contrasting hydrogen density
and/or hydrogen spin properties from adipose tissue and muscle for estimating
body composition. A quality control check of NMR parameters using a standard
provided by the manufacturer was performed at the beginning of each day of
testing. All animal experiments were approved by the Pennington Biomedical
Research Center and Maine Medical Center Research Institute Institutional Animal
Care and Use Committees and in accordance with National Institutes of Health
guidelines for care and use of laboratory animals.
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6

Fetal Brain Development in Inbred Mice

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The inbred mice strains C57BL/6J (strain # 000664), AKR/J (strain # 00064), and B6.Cg-Cav1tm1Mls/J (strain # 007083) used in this study were purchased from the Jackson Laboratory (Bar Harbor, ME, USA). Approximately 8-week-old mice of these strains were used to establish timed pregnancies separately, as described previously [6 (link)]. The vaginal plug was observed to keep a record of the start of pregnancy (day 1). On days (d) 12, 15, and 17, the pregnant mice were euthanized, the fetuses were collected [15 (link)] and washed in sterile PBS, and the whole brain was dissected from each fetus [27 (link)].
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7

Chronic Cigarette Smoke Exposure in Mice

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AKR/J and C57BL/6J mice (male and female) were purchased from Jackson Laboratories (Bar Harbor, ME). Mice (3-month-old) were exposed to 3R4F Research Cigarettes (University of Kentucky Reference Cigarette) for up to 6 hours/day, 5 days/week, for 4 months (AKR/J) or 6 months (C57BL/6J) using a total body CS exposure chamber (Teague TE-10, Teague Enterprises). The concentration of CS was periodically measured for total particulate matter, and concentration was maintained at 100–140 mg/m3.
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8

Genetic Background in Drug Abuse Sensitivity

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Male 129S1/SvlmJ, 129S4/SvJaeJ, 129S8/SvEvNimrJ, A/J, AKR/J, BALB/cJ, BTBRT < +>ltpr3 < tf>/J, C3H/HeJ, C57BL/6J, CBA/J, DBA/1J, DBA/2J, FVB/NJ, LP/J, MA/MyJ, NZB/BINJ, SJL/J, SM/J, & SWR/J mice were obtained from Jackson Laboratory (Bar Harbor, ME). 129S2/SvPasCrl were obtained from Charles River (Wilmington, MA). Individual strain characteristics can be found on https://mice.jax.org/ and https://www.criver.com/ (129S2). These mice were part of a larger project examining the influence of genetic background on sensitivity to drugs of abuse. All mice were 10–15 weeks of age for behavioral testing and tissue collection (n = 9–13 per strain). All mice were group-housed [with the exception of SJL/J, which were single-housed due to excessive social aggression characteristic of this strain; (43 (link))] with a 12-h light/dark cycle and unlimited access to food and water. All behavioral testing occurred between 8:00 A.M. and 5:00 P.M. All procedures were conducted in accordance with the NIH Guide for the Care and Use of Laboratory Animals and approved by the Penn State University IACUC Committee.
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9

Genetic Diversity of Mouse Strains

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129S1/SvImJ, A/J, AKR/J, BALB/cByJ, BTBRT+tf/J, BUB/BnJ, C3H/HeJ, C57BL/10J, C57BL/6J, C57BLKS/J, C57BR/cdJ, C57L/J, CAST/EiJ, CBA/J, DBA/2J, FVB/NJ, KK/HlJ, LP/J, MRL/MpJ, NOD.B10Sn-H2b/J (a congenic strain with the NOD genetic background but with a histocompatibility locus from a diabetes-resistant strain), NON/ShiLtJ, NZO/HlLtJ, NZW/LacJ, P/J, PL/J, PWD/PhJ, RIIIS/J, SJL/J, SM/J, SWR/J, and WSB/J were obtained from The Jackson Laboratory (Bar Harbor, ME). Three of the strains were not evaluated at all time points because of lymphoma development (AKR/J), lack of sufficient mice for analysis (CAST/EiJ), or self-mutilations resulting in euthanasia for humane purposes (SJL/J). (9 , 10 (link)) Taken together the strains selected were genetically diverse, which was estimated by SNP genotyping of over 100 strains into 7 distinct genetic groups, so that there were 3–7 strains representing each of the groups.(11 (link))
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10

Pulmonary Fibrosis Phenotypes Across Mouse Strains

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Female mice of six inbred strains (AKR/J, C3H/HeJ, A/J, C57BL/6J, 129S1/SvImJ, KK/HlJ) were purchased from the Jackson Laboratory (Bar Harbor, USA) and housed in the animal facility of the Meakins-Christie Laboratories. All mice were handled according to guidelines and regulations of the Canadian Council on Animal Care. Late stage radiation-induced phenotype values of pulmonary fibrosis score and time to respiratory distress, for these six strains, were taken from a previous report [22 (link)]. In that work mice received 18 Gy whole thorax irradiation and were euthanized upon presentation of respiratory distress which was defined as a loss of body weight exceeding 20%, accompanied by hunched posture, ruffled fur and visibly accelerated breathing. All mice euthanized due to presentation of distress symptoms had developed significant pneumonitis upon histological evaluation of lung tissue. The percent of the histological section covered with a fibrotic lesion was computed with imaging analysis as the fibrosis score of a mouse. The fibrosis scores used here are the average scores of mice from the same strain.
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