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Image pro premier version 9

Manufactured by Media Cybernetics
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Image Pro-Premier version 9.1 is a comprehensive image analysis software suite. It provides a powerful set of tools for capturing, processing, measuring, and analyzing digital images. The software offers a wide range of features to enhance, quantify, and interpret visual data across various scientific and research applications.

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11 protocols using image pro premier version 9

1

Immunofluorescence Assay for M1/M2 Macrophages

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After deparaffinized, rehydration and antigen retrieval, tissue sections were cooled at room temperature and rinsed in PBS for 5 minutes. After blocking with a blocking solution (Blocking One Histo; Nacalai Testique, Japan) for 1 h to prevent non-specific binding, the sections were incubated with primary rabbit anti-CD68 antibody (#ab125212) as M1 marker and rabbit anti-CD163 antibody as M2 marker (#ab182422) (Abcam, Cambridge, USA) overnight at a dilution of 1:200 in 5% BSA at 4°C. The sections were subsequently incubated with secondary antibody, Alexa-Fluor 647—conjugated goat anti-rabbit IgG (H+L) cross-adsorbed (A-21244) and Alexa-Fluor 488—conjugated donkey anti-rabbit IgG (H+L) highly cross-adsorbed (A-21206) secondary antibodies (Thermo Scientific, USA) respectively at a dilution of 1:400 in 5% BSA for 1 h at room temperature. Sections were washed with PBS prior and after the incubation of secondary antibodies. After washing, sections were mounted in UltraCruz Mounting Media (DAPI) (Santa Cruz, CA, USA). Finally, the slides were then observed under a fluorescence microscope (Olympus BX61, USA) and photomicrographs were taken. All the intensities of immunofluorescence expressions were quantitatively evaluated by using Image Pro-Premier version 9.1 (Media Cybernetics, Rockville, MD).
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2

Quantitative Hepatic Lipid Staining

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Frozen liver tissues were cryosectioned, and sections were immersed in absolute propylene glycol for 2 minutes and stained with Oil Red O for an hour. Then, the sections were differentiated in 85% propylene glycol solution for 1 minute, stained with hematoxylin, differentiated with acid alcohol and neutralized in weak ammonia water, and eventually mounted with glycerin jelly. Images were obtained under bright field LEICA DM 2000 microscope with the utilization of LEICA ICC50 HD camera (Leica Microsystems, Germany) and the hepatic mean intensities of Oil Red O-stained positive areas were quantitatively evaluated by using Image Pro-Premier version 9.1 (Media Cybernetics, Rockville, MD).
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3

Immunohistochemical Analysis of Inflammatory Markers

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Kidney and liver tissue sections were deparaffinized by immersion in xylene and rehydrated through an ethanol series. The sections were then incubated in a microwave in 0.01 M citrate buffer (pH 6.0, 10 min, 95–100°C) for antigen retrieval. To eliminate endogenous peroxidase activity, the sections were incubated with 3% hydrogen peroxide solution (Peroxidazed 1; Biocare Medical, Pacheco, California). Following incubation with a blocking solution (Blocking One Histo; Nacalai Tesque, Inc, Japan) for 1 h to prevent non-specific binding, the sections were incubated with primary rabbit IL-6 (1:200, sc-1265), MCP-1 (1:200, sc-1785) or TNF-α antibodies (1:200, sc-52746, Santa Cruz Biotechnology, California, USA) overnight at 4°C. The sections were subsequently washed and incubated with appropriate HRP conjugated polyclonal biotinylated secondary antibodies (1:400, sc-2004, Santa Cruz Biotechnology, California, USA and #P0447, Dako, Denmark). The sections were visualized with 3,3ʹ-diaminobenzidine tetrahydrochloride (DAB) substrate, counter-stained with hematoxylin and examined by brightfield microscopy (LEICA DM 2000) and images were obtained with a LEICA ICC50 HD camera (Leica Microsystems, Germany). All the immunohistochemical expressions were quantitatively evaluated by using Image Pro-Premier version 9.1 (Media Cybernetics, Rockville, MD).
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4

Immunofluorescence Analysis of NF-κB and Notch1

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Cells were seeded on coverslips and cultured until reaching 70% confluence. Following fixation with 4% PFA for 10 minutes, permeabilization was achieved using 0.2% Triton X-100 (20107ES20, Yi Sheng Biotechnology, Shanghai, China) for an additional 10 minutes. After overnight incubation at 4 °C, the coverslips were subjected to primary antibody treatment against NF-κB p65 (AN365, 1:500, Beyotime, Shanghai, China) and Notch1 (AF5249, 1:200, Beyotime, Shanghai, China), followed by subsequent incubation with secondary antibodies at room temperature for 1 hour. After PBS washing, the coverslips received staining with 0.5 µg/mL 4 ′ ,6-diamidino-2-phenylindole (DAPI) (R0306S, Beyotime, Shanghai, China) for 10 minutes and were then sealed with 20 µL mounting medium. The fluorescence intensity of cells was observed by confocal fluorescence microscopy (Olympus, Tokyo, Japan). All the intensities of immunofluorescence expressions were quantitatively evaluated by using Image Pro-Premier version 9.1 (Media Cybernetics, Rockville, MD, USA).
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5

Matrigel Invasion Assay with Imaging

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To measure Matrigel invasion, first a 1:1 mixture of Matrigel to PBS was used to coat the inside of a transwell membrane, then transwells were placed up-side down and 100,000 cells were plated on top of the transwell membrane and allowed to attach for 3 hours. Once the cells attached, the transwells were placed right-side up with serum-free medium containing PF573228 in the bottom well and 5% FBS/RPMI-1640 in the top chamber. Cells were allowed to migrate for 72 hours, then fixed and stained with Phalloidin-AlexaFluor 647. The invasion was quantified using Image-Pro Premier version 9.1 (Media Cybernetics, Rockville, MD). Cells were imaged in slices throughout the distance of the invasion using confocal microscopy. Average invasion distance was measured in micrometers from analysis of approximately 500 width measurements along the z plane for each sample.
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6

Retinal Micrograph Analysis Protocol

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For statistical analysis, all retinal micrographs were captured with a magnitude of 200× at 100 µm beyond the optic nerve region. Approximately 40 images per group of animals (n = 7) were analyzed. Image analysis was performed with software Image-Pro Premier Version 9.0 (Media Cybernetics, Inc., Rockville, MD, USA).
We used GraphPad Prism software (La Jolla, CA, USA; version 8.0). The figures show values graphed in box-and-whisker plots (median, first-third quartile, minimum-maximum value) for the ganglion cell layer (GCL), inner nuclear layer (INL), and outer nuclear layer (ONL). The mean and standard deviation (mean ± SD) are shown in Appendix A (Table A1, Table A2 and Table A3). In all cases, a one-way ANOVA test followed by Tukey’s test was performed. p <0.05 was considered statistically significant.
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7

Insulin-Positive Area Quantification

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The Z stack images of insulin-positive areas were obtained in the cy3 channel. The pinhole aperture size and automated z-axis stepping were held constant for all imaging sessions. Serial optical sections approximately 5 µm each were taken through the 50 μm-thick specimen. The areas of insulin-positive cells in µm 2 were analyzed and measured employing Image-Pro Premier Version 9.0 software (Media Cybernetics, Rockville, MD).
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8

Quantifying ZEB2 Expression in Aortic Tissue

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Immunohistochemistry was performed on de-paraffinized aortic tissue sections treated with DIVA solution (Biocare Medical, Concord, CA, USA), as described previously [5 (link)]. The expression of ZEB2 was quantified in n = 10 BAV-ND patients, and n = 11 TAV-ND patients, using mouse monoclonal anti-ZEB2 (Santa Cruz, Heidelberg, Germany, sc-271984). Quantification of per cent area positive staining was performed using Image-Pro® Premier version 9.1 Software (Media Cybernetics®, Silver Spring, MD, USA).
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9

Quantifying ZEB2 Expression in Aortic Tissue

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Immunohistochemistry was performed on de‐paraffinized aortic tissue sections treated with DIVA solution (Biocare Medical, Concord, CA, USA), as described previously 5. The expression of ZEB2 was quantified in n = 10 BAV‐ND patients, and n = 11 TAV‐ND patients, using mouse monoclonal anti‐ZEB2 (Santa Cruz, Heidelberg, Germany, sc‐271984). Quantification of per cent area positive staining was performed using Image‐Pro® Premier version 9.1 Software (Media Cybernetics®, Silver Spring, MD, USA).
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10

Histopathological Analysis of Liver Tissue

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The liver tissue of each group was processed to make frozen sections (10 μm). Sections for colorimetric staining (Picro-Sirius Red (SR)) and Masson’s trichrome (MT) were placed on gelatinized slides. The sections for purinergic receptor P2Y2, TLR4, and NE, and PCNA were placed on electro-charged slides. The photomicrographs for MT and SR were taken with a QIMAGING Micropuplisher 5.0 camera with Real-Time Viewing (RTV) coupled to an Olympus BX5 microscope. The images for PCNA were acquired with a Carl Zeiss microscope (Carl Zeiss Microscopy GmbH, Jena, Germany). Analysis and quantification of the area with collagen deposits (MT and SR) and with a signal for P2Y2, TLR4, NE, and the percentage of PCNA and TUNEL positive cells was performed with Image-Pro Premier Version 9.0 software (Media Cybernetics, Inc., Rockville, MD, USA). Four fields of each animal (n = 6) were analyzed, for a total of 16 fields of each condition in 20× photomicrographs.
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