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15 protocols using sc 7351

1

Immunohistochemical Marker Analysis Protocol

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Anti-Ki67 (SP6) (ab16667, Abcam); anti–cleaved caspase-3 (Asp175) antibody (9661, Cell Signaling); anti-CHOP (sc-7351, Santa Cruz); anti-T4 (1H1) (sc-52247, Santa Cruz); mAb anti-Tg (365997, Santa Cruz; ab156008, Abcam); rabbit anti-Tg and rabbit anti-BiP were previously described (38 (link), 45 (link)); rabbit anti-Pax8 (10336-1-AP, ProteinTech Group); mAb anti-Aminopeptidase N (1D7) was the gift of D. Fox, University of Michigan (78 (link)); rabbit anti-p58ipk (2940, Cell Signaling Technology); rabbit anti-phospho-eIF2α (Ser51) (3597, 9721, Cell Signaling) and total eIF2α (9722, Cell Signaling); mouse anti-tubulin (T5168, MilliporeSigma); and rabbit anti-PARP (9542, Cell Signaling).
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2

Western Blot Analysis of Apoptosis-Related Proteins

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Cells were seeded at 5×105 cells/well into 6-cm culture dishes and treated for 24 h as described above, after which 100 μl 2X SDS cell lysis solution was added per dish. Cellular proteins were then harvested and stored at −70°C. A mitochondrial and cytosolic protein preparation kit (Applygen Technologies, Inc., Beijing, China) was used to extract cytoplasmic proteins for the detection of cytochrome c (Cyt.c). After measurement of protein concentrations, 40 μg of protein per sample was subjected to electrophoresis and subsequently transferred to a nitrocellulose membrane (Bio-Rad, Berkeley, CA, USA). The membrane was blocked using skimmed milk and incubated overnight at 4°C with primary antibodies for GRP78 (sc-13968), CHOP (sc-7351), caspase-12 (sc-5627), or Cyt.c (sc-13561) (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) at 1:100 dilution, or with antibody for GAPDH (sc-47724; Santa Cruz Biotechnology, Inc.) at a 1:750 dilution. Next, the membrane was washed and incubated at room temperature for 2 h with secondary antibodies (cat. no. A0192; Beyotime Institute of Biotechnology), followed by enhanced chemiluminescence (ECL) autoradiography. Band intensity was measured using an ImageMaster™ VDS video documentation system (Amersham Biosciences Inc., Piscataway, NJ) and represented as fold-change relative to the GAPDH control.
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3

Immunofluorescence analysis of conjunctival cells

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Filters containing the human conjunctival specimens were hydrated for 5 min with distilled water, permeabilized and blocked in a PBS solution containing 5% bovine serum albumin, 0.5% Tween-20 and 1% Triton X-100 for 1 h at room temperature. The cells were then incubated with anti-HSPA5 (1:100; #610978; BD Biosciences, Franklin Lakes, NJ, USA) or anti-DDIT3 (1:100; sc-7351; Santa Cruz Biotechnology) antibodies overnight at 4 °C. Samples were washed and incubated with the corresponding Alexa Fluor 555-conjugated secondary antibody (1:500; Thermo Fisher Scientific) and DAPI for 1 h at room temperature. Samples were mounted with a drop of Permafluor mounting medium (Thermo Fisher Scientific) and visualized using a Zeiss LSM 800 confocal microscope (Carl Zeiss MicroImaging GmbH, Jena, Germany). For cell culture experiments, cells were grown on glass chamber slides, washed with Dulbecco’s PBS, and fixed with 4% paraformaldehyde for 30 min. The slides were then coverslipped with antifade mounting medium containing DAPI (Vectashield; Vector Laboratories, Burlingame, CA, USA) and imaged using a Leica TCS SP5 confocal microscope (Leica Microsystems, Wetzlar, Germany).
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4

Western Blot Analysis of Cellular Markers

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U87 MG cells were lysed in RIPA buffer (25 mM Tris-HCl pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium deoxy-cholate, 0.1% SDS) containing 1% (v/v) mammalian protease inhibitor cocktail from Sigma and separated on 10% SDS-PAGE, following by transferring to a nitrocellulose or PVDF (Immobilon-P Transfer Membranemembrane, Millipore). The membrane was then blocked in blocking buffer (20 mM Tris-HCl, 150 mM NaCl, 0.1% Tween-20, 10% milk) for overnight (16 hours) at room temperature. After blocking, corresponding primary antibody was incubated for one hour, followed by a 45 minute incubation with the corresponding HRP-conjugated secondary antibody at room temperature. Extensive washes with a blocking buffer were performed between each step. The protein immuno-complex was visualized by SuperSignal West PICO Chemiluminescent Substrate (Thermo Scientific). Dilutions for the primary antibodies were as follows: anti-GADD 153 mouse monoclonal antibody (sc-7351, Santa Cruz) at 1:200, anti-GRP78 rabbit polyclonal antibody (sc-13968, Santa Cruz) at 1:1000, anti-p-Akt1/2/3 (Ser 473) rabbit polyclonal antibody (sc-7985, Santa Cruz) at 1:200, anti-β-actin mouse monoclonal antibody (sc-47778, Santa Cruz) at 1:200.
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5

Western Blot Protein Analysis Protocol

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Using BCA protein assay (Sigma Aldrich), equal amounts of proteins were denatured with 1X protein loading buffer (ThermoFisher Scientific) at 100°C for 10 minutes. Samples were electrophoresed in an SDS-PAGE and transferred onto a polyvinylidene difluoride membrane (Millipore) by semidry electroblotting (Bio-Rad) as described.22 (link) Membranes were probed with primary antibodies for HRas (1:200; sc-520, Santa Cruz Biotechnology), c-Myc (1:200; sc-789, Santa Cruz Biotechnology), p53 (1:500; sc-126, Santa Cruz Biotechnology), COX2 (1:1000; clone CX229, Caymann Chemicals), E6 (sc-460, Santa Cruz Biotechnology), E1A (1:1000, clone M73, Millipore), ATF4 (1:250, sc-200, Santa Cruz Biotechnology), CHOP (1:1000, sc-7351, Santa Cruz Biotechnology), SCD1 (1:300, sc30435, goat polyclonal, Santa Cruz), β-actin (1:1000, A1978, Sigma-Aldrich), BiP (1:250, sc-1050, Santa Cruz Biotechnology), HA (1:1000, H6908 Sigma), SCD-5 (AP53809PU-N, 2BScientific Ltd), ATF-3 (sc-188(C-19), Santa Cruz), and against GAPDH (1:1500, sc-32233, Santa Cruz). The antibody against Bap31 was kindly provided by Dr Gordon Shore. Antibody binding was detected by enhanced chemiluminescence (Thermo Sientific) and visualised on film.
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6

Antibody Panel for Signaling Pathways

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The following primary antibodies were used: rabbit anti‐AVP (AB1565; Millipore); mouse anti‐AVP (MABN845; Millipore); mouse anti‐CHOP (sc‐7351; Santa Cruz, USA); rabbit anti‐PI3K (41339; SAB, USA); rabbit anti‐p‐PI3K (phosopho‐Tyr467/199) (11508; SAB); rabbit anti‐Akt (33748; SAB); rabbit anti‐p‐Akt (phospho‐Ser473) (11054; SAB); mouse anti‐ERK1/2 (AF1051; Beyotime); mouse anti‐p‐ERK1/2 (phosopho‐Thr202/Tyr204) (AF1891; Beyotime); rabbit anti‐p‐JNK (phospho‐Thr183/Tyr185) (4668, CST, USA); mouse anti‐BAD (AB008; Beyotime); rabbit anti‐Caspase3 (19677‐1‐AP; Proteintech, USA); rabbit anti‐PERK (20582‐1‐AP; Proteintech); rabbit anti‐XBP‐1 (25997‐1‐AP; Proteintech); rabbit anti‐ATF‐6 (24169‐1‐AP; Proteintech); rabbit anti‐ATF‐4 (10835‐1‐AP; Proteintech); rabbit anti‐eIF2α (11233‐1‐AP; Proteintech); β‐actin (CW0264; CWbio, China); and β‐tubulin (CW0098; CWbio).
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7

Protein Expression Analysis of Cardiomyocytes

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NRVMs were washed with cold PBS and lysed with 1
× SDS-PAGE sample buffer (45 mM Tris-HCl, pH 6.8, 10% glycerol, 1% SDS, 0.01% bromophenol blue, and 0.05 mM DTT) supplemented with 1 mM PMSF and a protease inhibitor cocktail (Roche, Mannheim, Germany). The lysates were boiled at 99°C for 10 min, separated by 12% SDS-PAGE, and then transferred onto PVDF membranes. The PVDF membranes were blocked with 5% non-fat milk in Tris-buffered saline containing 0.1% Tween-20 (TBST) for 1 h at a room temperature, followed by overnight incubation at 4°C with the appropriate primary antibodies against C/EBP homologous protein (CHOP) (1:500, sc-7351; Santa Cruz Biotechnology, Dallas, USA), ubiquitin (1:500, sc-8017; Santa Cruz Biotechnology), GRP78 (1:500, BS6479; Bioworld Technology, Shanghai, China), eukaryotic initiation factor 2α (eIF2α) (1:500, BS3651; Bioworld Technology), and phosphorylated eIF2α at Ser51 (p-eIF2α) (1:500, BS4787; Bioworld Technology). The membranes were washed with TBST and incubated with HRP-conjugated secondary antibodies (1:10,000, BS13278, BS12478; Bioworld Technology). Finally, the protein blots were visualized using an enhanced chemiluminescence kit (Bio-Rad, Hercules, USA) with the Fluor Chem E System (Cell Biosciences, Santa Clara, USA). To promote ER stress in NRVMs, we used thapsigargin (1.0 μM, T9033; Sigma-Aldrich Chemical) as a positive control.
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8

TDAG51 and CHOP Regulation in HK-2 Cells

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HK-2 cells were transfected with eGFP or TDAG51 bound to GFP (TD-GFP). 48 h after transfection, cells were fixed in 4% paraformaldehyde, and immunofluorescently stained with CHOP antibodies (red; sc-7351; Santa Cruz) and a fluorescently labeled secondary antibody. Cell nuclei were stained with DAPI (blue). HK-2 cells were also transfected with pcDNA3.1 control vector or pcDNA3.1 vector with human CHOP gene. 72 h after transfection, cells were fixed and immunofluorescently stained with TUNEL (red; Roche) for apoptosis and CHOP antibodies (green; sc-575; Santa Cruz) with a fluorescently labeled secondary antibody. Cells were imaged using an Olympus IX81 Nipkow scanning disc confocal microscope.
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9

Immunofluorescence Analysis of ER Stress Markers

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After washing with PBS, the cells were fixed in 4% paraformaldehyde solution for 15 min and blocked with 10% goat serum albumin for 1 h, followed by incubating with primary antibodies overnight at 4 °C, after which they were stained with secondary antibodies and DAPI for 1 h at room temperature. The primary and secondary antibodies used were as follows: anti-GRP78 (1:50, sc-166490, Santa Cruz Biotechnology), anti-CHOP (1:50, sc-7351, Santa Cruz Biotechnology), anti-XBP1 (1:50, sc-8015, Santa Cruz Biotechnology), Alexa Fluor 488 (1:1000; A28175, Thermo Fisher Scientific), and Alexa Fluor 555 (1:1000; A21428, Thermo Fisher Scientific). After washing three times, the cells were observed using a Nikon A1 confocal microscope (Tokyo, Japan).
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10

Western Blot Analysis of Oxidative Stress Markers

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Aliquots of protein (20–30 μg) were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and blotted onto polyvinylidene difluoride (PVDF) membranes (EMD Millipore, Temecula, CA, USA). The blots were blocked with 5% skim milk in Tris-buffered saline containing 0.1% Tween-20 and were then incubated with the antibodies. The primary antibodies used were anti-Prdx-SO2/3 (ab16830; Abcam, Cambridge, UK), anti-SOD1 [25 (link)], anti-Prdx1 [25 (link)], anti-Prdx2 (LF-PA0091; AbFrontier, Seoul, Korea), anti-Prdx3 (LF-MA0044; AbFrontier), anti-Prdx4 [17 (link)], anti-endoplasmic reticulum stress-C/EBP homologous protein (CHOP) (sc-7351; Santa Cruz Biotechnology, CA, USA), anti-PDI (sc-20132; Santa Cruz Biotechnology), anti-IRE1α (number 3294; Cell Signaling Technology, Danvers, MA, USA), anticleaved caspase-3 (number 9664; Cell Signaling Technology), and anti β-actin (sc-69879; Santa Cruz Biotechnology). Horseradish peroxidase-conjugated goat anti-rabbit, anti-mouse, and anti-guinea pig IgG antibodies (Santa Cruz Biotechnology) were used as the secondary antibodies. After washing, immune reactive bands were detected by measuring the chemiluminescence using Immobilon Western chemiluminescent horseradish peroxidase substrate (EMD Millipore, Temecula, CA, USA) on an image analyzer (ImageQuant LAS 500; GE Healthcare Life Sciences, Buckinghamshire, UK).
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