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6 protocols using power blotter semi dry transfer system

1

Expression Analysis of Wild-Type and Mutant GPs

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Expression levels of wild-type and mutant GPs in transfected cells were verified by SDS-PAGE and Western blotting (Figure S1C). Thirty hours post transfection, cells were lysed with ice-cold RIPA lysis buffer [50 mM Tris buffer, pH 8.0, 150 mM NaCl, 1% (v/v) Triton X-100, 0.5% (w/v) sodium deoxycholate, and 0.1% (w/v) SDS] supplemented with protease inhibitors (1.2 mg/ml leupeptin, 1 mM pepstatin A, 100 mM PMSF, and 1 mg/ml aprotinin). The cleared whole-cell lysate was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Proteins were transferred to a 0.2-m nitrocellulose membrane using a semi-dry transfer apparatus (Thermo Fisher Scientific, Power Blotter- Semi-dry Transfer System). Membrane was blocked with Tris-buffered saline containing 0.05% (v/v) Tween-20 (TBST) and 10% (w/v) bovine serum albumin. Membrane was incubated with biotinylated 3C10 anti GP antibody in 4°C overnight, washed with TBST, and then incubated for 1 h at room temperature with HRP-conjugated goat anti-rabbit IgG (#12-348 Sigma-Aldrich). For signal development, membrane washed with TBST before antibody binding was visualized using ECL reagent (#34579, Thermo Fisher Scientific).
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2

Western Blot Analysis of MERVL-Gag

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The cells were directly lysed in Laemmli SDS sample buffer (1×, 62.5 mM Tris-HCl (pH 6.8), 2% SDS, 10% glycerol, 5% β-mercaptoethanol and 0.02% bromophenol blue) and sonicate with Bioruptor at a high setting, for 10 cycles each of 30 s with 30 s intervals. Total proteins were denatured at 95°C for 5 min and separated by 10% SDS-PAGE. The proteins were then transferred onto a Protran Nitrocellulose Membranes (0.45 µm pore size, GE Healthcare) via Power Blotter-Semi-dry Transfer System (Thermo Fisher Scientific). The membrane was blocked with Bullet Blocking One for Western Blotting (Nacalai Tesque) for 10 min at RT with gently rocking before incubation with mouse anti-MERVL-Gag (1/5 dilution, kept in our lab) or mouse anti-β-tubulin (1/2,000 dilution, E7, Developmental Studies Hybridoma Bank) antibody in 1:20 diluted blocking buffer with 0.1% PBST at 4°C overnight. The following day, the membranes were then incubated with HRP-conjugated goat anti-mouse immunoglobulin G secondary antibody (1/10,000 dilution, #330, MBL Life Science) in 1:20 diluted blocking buffer with 0.1% PBST for 30 min at RT with gently rocking. After washing three times with 0.1% PBST for 10 min each, Blots were developed using ECL Western Blotting Detection Reagent (Sigma) and exposed onto X-ray film.
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3

Quantitative Western Blot Analysis of C. difficile Toxins

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Protein concentrations were determined using a modified Lowry assay (Thermo Scientific, Waltham, MA) with bovine serum albumin as a standard. Equal amounts of protein (40 μg) per sample were combined with SDS-loading buffer (2X Laemmli buffer) with 5% 2-Mercaptoethanol, and run on pre-casted 7.5% acrylamide gels (Bio-Rad, Hercules, CA) at 100V for 90 min. For immunoblots performed with recombinant protein a total of 50 ng was used of CI_01447 and CI_01448 was used. For C. difficile TcdA and TcdB, 1 ng was used. Proteins transferred onto polyvinylidene difluoride (PVDF) membranes using a Power Blotter–Semi-dry Transfer System (Thermo Fisher Scientific, Waltham, MA). Membranes were incubated in blocking buffer (5% Skim milk, 0.1% Tween 20 in PBS) for 2 h at room temperature or overnight at 4°C with gentle shaking. Blots were probed with a 1: 5,000 dilution of chicken Clostridium difficile anti-toxin A, conjugated with HRP (ACdTA-HRP), or with chicken Clostridium difficile anti-toxin B, conjugated with HRP (AcdTB-HRP) (Exalpha Biologicals, Inc., Shirley, MA). Blots were subsequently developed using Immun-Star WesternC chemiluminescence reagents (Bio-Rad, Hercules, CA) and imaged using Syn G: BOX Chemi XX6 (Syngene International Limited, India).
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4

Expression and Analysis of scvhFGF19 Variants

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The four plasmid constructs were transformed into E. coli XL1-Blue, Origami 2, and Origami (DE3) by incubating competent cells with each plasmid under the general conditions for heat shock treatment. Using harvested cells after the culture of the transformed cells, total and soluble fractions of the expressed proteins were prepared as described in the analysis of the expression pattern of mCherry-fused scvhFGF19 variants. The expression patterns of scvhFGF19 were analyzed using SDS-PAGE and Western blotting. For Western blot analysis, the proteins separated by SDS-PAGE (15%) were transferred into a nitrocellulose membrane (GE healthcare, Chicago, IL, USA) using the Power Blotter-Semi-dry transfer system (ThermoFisher scientific, Waltham, MA, USA) according to the manufacturer’s instructions. The membrane was then blocked using 5% skim milk for 1 h, followed by overnight probing at 4 °C with anti-human FGF19 monoclonal antibody (1:5000, R&D Systems, Minneapolis, MN, USA). Next, the membrane was incubated with horseradish peroxidase-linked goat anti-mouse immunoglobulin G (1:5000, Enzo Life Sciences, Ann Arbor, MI, USA) at room temperature for 1 h. The proteins on the membrane were visualized using the ECL kit detection system (Bio-Rad, Hercules, CA, USA).
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5

Western Blot Analysis of FLAG-TOE1 Proteins

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MCC142 cells stably expressing recombinant FLAG-WT or C80S-TOE1 were scraped from 6 well plates and were collected by centrifugation (400g, 5 min). After PBS washes, protein was extracted using RIPA lysis buffer before quantification using a BCA assay kit (Thermo). After mixing with 4X LDS sample buffer (Invitrogen), proteins were then resolved by SDS-PAGE, transferred to nitrocellulose membrane using a power blotter semi-dry transfer system (Thermo). The membrane was blocked with 5% milk in TBST buffer (20 mM Tris-HCl pH=7.5, 150 mM NaCl, 0.1% tween 20) for 1 hour at room temperature. The blot was then incubated with anti-FLAG HRP antibody (Sigma Cat# A8592, Clone# M2, 1:10,000 dilution) or antiGAPDH HRP antibody (Proteintech Cat# HRP-60004, Clone# 1E6D9, 1:10,000 dilution) at room temperature for 1hr. After three TBST washes, the blot was incubated with chemiluminescent HRP substrates (Thermo) and images were acquired on a Bio-Rad ChemiDoc imaging system.
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6

Western Blot Transfer and Detection

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Western blot assays were performed with Power Blotter Semidry Transfer System (Thermo Fisher Scientific). To control the correct transfer, nitrocellulose membranes were stained with Pierce Reversible Protein Stain Kit for nitrocellulose membranes (Thermo Fisher Scientific), and the image was acquired with Alliance 9.7 Western Blot Imaging System (UVITEC). Membranes were blocked with 4% skimmed milk (nonfat dry milk) or 3% BSA in PBS and 0.1% or 0.01% Tween-20, depending on the antibody. The blocking step lasted for around 1 h. The primary antibody was incubated overnight at 4 °C and, the day after, three washes with PBS and 0.1% or 0.01% Tween-20 were performed (5 min each).
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