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3 protocols using ikk 16

1

Comprehensive Antibody Characterization for Cell Signaling

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Anti-RHBDL2 and anti-E-cadherin antibodies were purchased from Proteintech (Rosemont, IL, USA). Anti-VE-cadherin (clone BV-9) and anti-HA (clone F-7) antibodies were supplied by Santa Cruz Biotechnology. EGFR phosphorylation was detected by a phospho-specific antibody (directed against p-Tyr1068) from Abcam (Cambridge, UK). The total and phosphorylated forms of p44/42 MAPK(Erk1/2) and AKT (against pAKT-S473 and pMAPK-Thr202/Tyr204) were detected with antibodies from Cell Signaling Technology (Danvers, MA, USA). Other antibodies that were applied in this study were: for Western Blotting, anti-vinculin (Sigma), anti-N-cadherin (Abcam), anti-Thrombomodulin (D-3, Santa Cruz Biotechnology, Dallas, CA, USA), and anti-RFP (Rockland Immunochemicals Inc., Limerick, PA, USA), for immunofluorescence anti-E-cadherin (clone 36/E, BD Transduction Laboratories) and anti-VE-cadherin (clone F-8, Santa Cruz Biotechnology). The secondary antibodies were purchased from Jackson Laboratories (Bar Harbor, ME, USA). The E-cadherin function-blocking antibody DECMA-1 was purchased from Sigma Aldrich. Santa Cruz Biotechnology supplied the IKK inhibitor IKK-16, while the metalloproteases inhibitors BB94 and Marimastat and the serine protease inhibitor 3,4-dichloroisocoumarin (DCI) were from Sigma. Human recombinant TNFα was purchased from Peprotech (Rocky Hill, NJ, USA).
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2

OP9-DL1 Coculture for B Cell Development

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OP9-DL1 and OP9-GFP mouse stromal cell lines (16 ) were obtained from Dr. Juan Carlos Zúñiga-Pflücker (University of Toronto). In a 24-well plate, 100,000 OP9-DL1 or OP9-GFP cells were plated in 1 ml of OP9 media (10 g/L α-MEM powder (12561; Thermo Fisher Scientific), 2.2 g/L sodium bicarbonate, pH 7.0, 5% heat-inactivated FBS, 1X penicillin/streptomycin).
CD93+ cells were enriched from splenocytes from naïve mice by first staining cells with CD93-PE (AA4.1; BioLegend), then performing immunomagnetic enrichment of CD93-PE-stained cells with anti-PE microbeads (130–105-639; Miltenyi Biotec) according to the manufacturer’s instructions. Enriched cells were resuspended in B cell media (RPMI 1640, 10% heat-inactivated FBS, 0.05 mM 2-ME, 1X nonessential amino acids, 1X penicillin/streptomycin, 10 mM HEPES, and 1 mM sodium pyruvate) at 150,000 cells/ml, then 1 ml was plated onto OP9 cells after gently aspirating off OP9 media. 10 ng BAFF (8876-BF-010; R&D Systems) was added to the wells. Cells were placed in a 37°C incubator for 3 days, then underwent analyses. Where indicated, 800 nM of the IκB kinase inhibitor IKK-16 (Sigma SML1138) (17 (link)) or DMSO was added to the wells.
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3

Cell Culture and Compound Treatment

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DLD-1, SW480, HCT-116, and RPE-1 cells were maintained in Dulbecco’s modified Eagle’s medium (Bio-west) supplemented with 10% fetal bovine serum (Gibco) and an antibiotic-antimycotic mixture (Gibco). Cells at 70 to 80% confluence were treated with Compounds or dimethyl sulfoxide vehicle. PGE2, CAY10598, GW627368X, and AZD6244(Selumetinib) were from Cayman Chemical. FR-180204 was from TOCRIS Bioscience. LY294002, IKK16, and Verteporfin were purchased from Sigma Aldrich.
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