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9 protocols using enhanced chemiluminescence

1

Western Blot Analysis of Protein Expression

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Total proteins were extracted from lung tissues, primary fibroblasts, and Mlg cells using cold RIPA buffer containing protease and phosphatase inhibitor cocktail (Proteintech, Wuhan, China). The proteins were then separated with 10% SDS-PAGE and transferred to PVDF membranes (Millipore, Bedford, MA, USA). The membranes were blocked in 5% (w/v) non-fat skimmed milk/TBST for 1.5 h. Primary antibodies against α-SMA (1:500, Servicebio), Fibronectin (1:1000, Cell Signaling Technology, Danvers, MA, USA), Collagen-1 (1:1000, Cell Signaling Technology), Grp78 (1:1000, Cell Signaling Technology), CHOP (1:1000, Cell Signaling Technology), p-STAT3 (1:500, Affinity), p-JAK1 (1:1000, Cell Signaling Technology), STAT3 (1:1000, Proteintech), JAK1 (1:1000, Proteintech), VDR (1:1000, Proteintech), β-actin (1:3000, Sigma, St. Louis, MO, USA) and ATF6 (1:500, Affinity, Changzhou, China) were incubated with the membranes overnight at 4 °C. After washing three times with TBST buffer, the membranes were incubated in horseradish peroxidase-labeled secondary antibodies (1:1000, Proteintech) for 1 h at room temperature. The Western blots were subsequently detected using enhanced chemiluminescence (Biosharp, Hefei, China), and the chemiluminescent signals were quantified using Tanon Chemilumenescence Instrument (Tanon, Shanghai, China). The images were analyzed using Fiji software.
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2

Western Blot Analysis of Key Proteins

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Levels of iNOS, Arg1, N protein, and GAPDH were measured by Western blotting. Briefly, treated cells were collected and lysed on ice for 30 min in a protein isolation buffer, subjected to SDS-PAGE, and then transferred to a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% low-fat milk at 37 °C for 1 h and then probed with MAb anti-N (1:100; prepared in the College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, China), rabbit anti-iNOS (1:2000, Proteintech), rabbit anti-Arg1 (1:1000; ProteinTech, Rosemont, IL, USA), and rabbit anti-GAPDH (1:1000; Beyotime Biotechnology, Shanghai, China) at 37 °C for 2 h. After washing, the membrane was incubated with HRP-conjugated anti-mouse or anti-rabbit secondary antibody (1:10,000, ABclonal). Bound proteins were detected by enhanced chemiluminescence (Biosharp, Hefei, China) and imaged using a chemiluminescence imaging system (Tanon, Shanghai, China).
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3

Protein Expression Analysis Protocol

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Cells were lysed in lysis buffer containing phosphatase inhibitors and the concentrations of protein were obtained using bicinchoninic acid (BCA) method (Fdbio science, China). A total of 18 μg of protein was separated by using 10% SDS–PAGE gel and transferred onto polyvinylidene difluoride (PVDF) membrane (Merck Millipore, Ireland). After blocking for 1–2 h, the membrane was incubated with primary antibody anti-MCM3 (ab-DF6205, Affinity Biosciences) and anti-B-actin (20536-1-AP, Proteintech Group Inc.) diluted in 5% BSA or skimmed milk in TBST with shaking overnight at 4 °C followed by HRP conjugated secondary antibody at room temperature for 2 h. B-actin was used as the loading control. The protein expression was detected by using enhanced chemiluminescence (Biosharp, China).
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4

Western Blot Analysis of Necroptosis Markers

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RIPA buffer, phosphatase, and protease inhibitors (MEC, China) was added to mouse lung or cell samples, and being lysed on ice plate. An equal amount of protein sample was added to each well for electrophoresis in SDS-PAGE, and then transferred to a polyvinylidene fluoride membrane (Millipore, USA). At room temperature, the membrane was washed with TBST and sealed in 5% skimmed milk for 60 min. The membrane was washed three times for 5 min each time and then incubated with primary antibodies against RIP1 (1:500 dilution, 3493, Cell Signaling Technology, USA), RIP3 (phospho S232) (1:500 dilution, ab195117, Abcam, USA), RIP3 (1:500 dilution, sc-374639, Santa-Cruz, USA), MLKL (phospho S345) (1:1,000 dilution, ab196436, Abcam, USA), MLKL (1:500 dilution, sc-293201, Santa-Cruz, USA), and GAPDH (1:1,000–1:2,000 dilution, CST, USA) at 4°C overnight. After membranes were incubated with appropriate secondary antibodies for 1 h at room temperature, protein bands were visualized using enhanced chemiluminescence (Biosharp, Shanghai, China). Signal quantification was performed with ImageJ software.
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5

Western Blot Analysis of AMPK Pathway

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Protein samples from the penumbra of cortex and HT-22 cells were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto PVDF membranes. The membranes were blocked with 5% BSA for 2 ​h at room temperature, then incubated in primary antibodies against AMPK (1:1000, 5832, CST), p-AMPK (1:1000, Ab133448, Abcam), cleaved caspase-3(1:500, 9661, CST), SGLT1(1:1000, 07-1417, Millipore) and β-actin (1:1000, 81115-1-RR, Proteintech) overnight at 4 °C. The next day, the membranes were incubated with secondary antibodies. The target protein was detected with enhanced chemiluminescence (Biosharp, China) and the signal of band intensities was quantitated using ImageJ.
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6

Quantification of Protein Expression

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Total cellular proteins were resolved in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred to polyvinylidene difluoride (PVDF) membranes (Pall Australia, Victoria, Australia). The membranes were blocked and incubated with anti-Runx-2, anti-BMP-2, and anti-TXNIP mAbs (Sigma-Aldrich, New South Wales, Australia); an anti-β-actin mAb (Biosharp, Beijing, China) was used as the internal control. The membranes were exposed to a horseradish peroxidase-conjugated secondary antibody and protein bands were detected by enhanced chemiluminescence (Biosharp, Beijing, China).
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7

Western Blot Analysis of RhoA/ROCK Signaling

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RIPA Lysis Buffer supplemented with protease inhibitors was used to extract total protein from cells. Equal quantities of protein were separated on 8% SDS-PAGE gel and deposited onto polyvinylidene difluoride (PVDF) membranes. The PVDF membranes were blocked for 2 hours at room temperature with 5% nonfat dry milk. Then, the PVDF membranes were incubated with specific primary antibodies, including Anti-RhoA, Anti-ROCK1, Anti-ROCK2, Anti-Phospho-MYPT-1, and Anti-β-actin at 4 °C overnight. Next, the membranes were incubated with second antibodies (Horseradish peroxidase-labeled IgG anti-rabbit/mouse IgG antibody, Beyotime) for 2 hours at room temperature. Enhanced chemiluminescence (Biosharp, Anhui, China) was used to reveal immunoreactive bands, then the bands were analyzed by using Image J software.
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8

Western Blot Analysis of Protein Signaling

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The cells were harvested and lysed by RIPA lysis buffer (Biosharp, Anhui, China) containing protease inhibitors (MCE, State of New Jersey, USA) and phosphatase inhibitors (EpiZyme, Shanghai, China). The protein concentration was determined using a BCA protein assay kit (Biosharp, Anhui, China). A 10–30 µg aliquot of the total proteins from each sample was taken, separated by 15% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis, and transferred to polyvinylidene fluoride membranes. The membrane was blocked with 5% non‐fat milk or BSA at room temperature for 2 h, probed with primary antibodies (anti‐Flag, anti‐LC3, anti‐pMLKL, anti‐pRIP3: Abcam, Cambridge, England; anti‐β‐tubulin, anti‐β‐actin: Abmart, Shanghai, China), and incubated with the corresponding secondary antibodies (Abmart, Shanghai, China). The immunoblot proteins were detected by enhanced chemiluminescence (Biosharp, Anhui, China). The assays were repeated three times, and the gray values were analyzed by Touch Imager and GraphPad Prism 8.
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9

Characterization of Chondrocyte Signaling Pathways

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NPCs were lysed using RIPA buffer (Thermo, USA) containing protease and phosphatase inhibitors (with a ratio volume of 100 : 1). Samples were quantified using a BCA protein assay kit (Thermo, USA). Equal amounts of total protein for each treatment group were separated by SDS-PAGE gel and transferred to a polyvinylidene difluoride membrane. After blocking with 5% nonfat milk or 5% BSA for 2 h at room temperature, the membranes were incubated overnight at 4°C with primary antibodies against Bcl 2 (1 : 1000, Proteintech, China), BAX (1 : 2000, Proteintech), collagen II (1 : 1000, Abcam, UK), MMP13 (1 : 2500, Bioss, China), aggrecan (ACAN, 1 : 1000, Proteintech), p38MAPK (1 : 1000, CST, USA), p-p38MAPK (1 : 1000, CST), p-mTOR (1 : 1000, CST), mTOR (1 : 1000, CST), LC3 II/I (1 : 1000, CST), Beclin-1 (1 : 1000, CST), p62 (1 : 1000, CST), and GAPDH (1 : 5000, Proteintech). The next day, membranes were incubated with HRP-conjugated secondary antibodies (1 : 5000, ZSGB-BIO, China) for 2 h at room temperature. Protein bands were detected with enhanced chemiluminescence (Biosharp, China) and quantified using Image Lab software (Bio-Rad, USA).
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