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6 protocols using tsg101

1

Isolation and Characterization of Exosomes

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N-NPSCs and D-NPSCs were cultured in exosome-free medium for 2 days. NPSC-exo was isolated from supernatant by ultracentrifugation. The culture medium was centrifuged at 1,000 × g for 10 min at 4°C to remove dead cells and centrifuged at 10,000 × g for 30 min at 4°C to remove cell debris. Next, exosomes were centrifuged by ultracentrifugation at 100,000 × g for 70 min after filtering through 0.22-μm membrane filters. Moreover, exosomes were purified by a commercial kit using ExoJuice (WeinaBio, China) according to the instruction of the manufacturer. Briefly, exosome samples were transferred to 5-ml ultracentrifuge tubes and 500 µl of Exojuice was added to the bottom. The tube was then centrifuged at 100,000 × g for 70 min at 4°C, carefully recovered, and fractionated from the bottom. The first 200 µl of the liquid from the bottom of the tube was discarded, then the next 200 µl fraction of solution from the bottom was collected, which contained the purified exosomes.
After purification, morphology was observed by transmission electron microscopy, particle diameter and concentration were analyzed by flow nano analysis, and the exosomal markers, such as CD9, CD81, and TSG101 (Affinity, USA) were detected by Western blotting assay.
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2

Western Blot Analysis of Protein Markers

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Proteins were extracted from cells and tissues using RIPA buffer, and the concentration of total protein was determined using a BCA Assay Kit (Yeasen Biotech). The protein samples underwent separation using SDS-PAGE and were subsequently transferred to PVDF membranes, followed by blocking in 5% non-fat milk for 2 h. Next, the membranes were incubated with specific primary antibodies overnight at 4°C, followed by secondary antibodies for 1 h. The detection of the band signals was accomplished using an electrochemiluminescence (ECL) system. The following primary antibodies were used in this study TSG101 (Affinity), CD63 (Affinity), N-cadherin (Affinity), E-cadherin (Affinity), vimentin (Affinity), GAPDH (ABclonal), RAS (ABclonal), p-RAF1 (ABclonal), RAF1 (ABclonal), p-MEK1/2 (ABclonal), MEK1/2 (ABclonal), p-ERK1/2 (ABclonal), ERK1/2 (ABclonal), and TPR (Abcam).
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3

Exosomal Protein Profiling by Western Blot

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TSG101 (Affinity, DF8427), CD63 (Affinity, DF2305), and ALIX (Affinity, DF9027) were utilized as positive controls in Western blot analysis, whereas Calnexin (Affinity, AF5362), an endoplasmic reticulum protein, was used as a negative control. The NanoSight NS300 system (NanoSight Technology, Malvern, UK) was employed to directly monitor the number and size distribution of exosomes.
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4

Exosomal Protein Profiling by Western Blot

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Proteins from exosomes or BMSCs were extracted using RIPA buffer (Cell Signaling Technology, USA). Equal amounts of total proteins (30 μg) were fractionated by SDS-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Millipore, USA). After blocking, the membranes were incubated overnight at 4°C with primary antibodies against TSG101 (1:1000, Affinity), CD9 (1:1000, Affinity), TGF-β1 (1:1000, Abcam), SMAD2/3 (1:1000, Cell Signaling Technology), SMAD2 (phosphor T8), and SMAD3 (phosphor T8) (1:1000, Abcam). The membranes were then incubated with a secondary antibody conjugated with horseradish peroxidase (1:5000, Cell Signaling Technology) and visualized using an enhanced chemiluminescence detection system (General Electric Company, USA).
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5

Exosome Isolation and Characterization from Breast Cancer Plasma

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Exosomes from the plasma of BC patients were isolated with the Hieff Quick Exosome Isolation Kit (for Serum/Plasma) (Yeasen) according to the manufacturer’s manual. Western blotting was employed to identify the presence of positive markers, specifically CD63 (Affinity) and TSG101 (Affinity). The Malvern particle size meter was used to measure the particle size of exosomes. The morphological analysis of exosomes was conducted using transmission electron microscopy (Tecnai Spirit Biotwin) and images were observed.
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6

Western Blot Analysis of Cellular Proteins

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Protein samples prepared from cells, exosomes or tissues, were separated by electrophoresis and transferred on PVDF membrane; PVDF membrane was consecutively treated with primary antibodies (HIPK2, Affinity, DF7982, 1:1000, Wuhan, CN; Calpain1, Affinity, DF6306, 1:1000, Wuhan, CN; GSα, sigma, 06‐237, 1:1000, Shanghai, CN; LC3, Affinity, AF5402, 1:1000, Wuhan, CN; P62, Affinity, AF5384, 1:1000, Wuhan, CN; GAPDH, Xianzhi, AB‐P‐R001, 1:1000, Wuhan, CN; CD9, Proteintech, 20597‐1‐AP, 1:1000, Wuhan, CN; TSG101, Affinity, DF8427, 1:1000, Wuhan, CN; CD63, Affinity, AF5117, 1:1000, Wuhan, CN; calnexin, Affinity, AF5362, 1:1000, Wuhan, CN), HRP labelled secondary antibody (HRP labelled secondary antibody of sheep and rabbit, Boster, BA1054, 1:10,000, Wuhan, CN) and ECL reagents. Finally, the film was analysed using Image J software (National Institutes of Health, USA).
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