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5 protocols using orf45

1

Western Blot Analysis of KSHV Proteins

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Western blot analysis was performed as described previously [17 (link)]. The anti-ORF50 antibody used in the study was generated in our laboratory [17 (link)]. Antibodies to K8 (sc-57889; Santa Cruz), ORF45 (sc-53883; Santa Cruz), Rta (8C12; Argene), EA-D (sc-58121; Santa Cruz), c-Fos (sc-52; Santa Cruz), c-Jun (#9165; Cell signaling), phospho-c-Jun (#3270; Cell signaling), JNK (sc-474; Santa Cruz), phospho-JNK (#4668; Cell signaling), and actin (MAB101; Chemicon) were obtained commercially.
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2

Western Blot Protein Detection Protocol

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Cells were collected in PBS and lysed in PBS containing 0.5% Nonidet P-40 (NP-40) containing 1X protease inhibitor cocktail (Roche, 4693132001). The cell lysates were sonicated 5 times (pulsed for 30 sec with 30 sec interval) using a Bioruptor (Diagenode, UCD-200) at low power setting. Total cell lysate (TCL) were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride membranes (PVDF; PerkinElmer, 1002001), blocked with 5% nonfat skim milk or 5% BSA (UniRegion, UR-BSA001-50G) in 1X TBST, and probed with primary antibody at 4 oC for 16 hours. After incubating the membrane with horseradish peroxidase (HRP) linked secondary antibody (GE healthcare, NA934 and NA931), the protein expression levels were detected by Pierce ECL Western Blotting Substrate (Thermo, 32106). Primary antibodies against KDM4A (Polyclonal antibody purified from rabbit) [12 (link)], K-bZIP (1:1000; Santa Cruz Biotechnology, sc-69797), Orf45 (1:1000; Santa Cruz Biotechnology, sc-53883), HA tag (1:4000; Cell Signaling Technology, #3724) and α-Tubulin (1:4000; Sigma, T6074-200UL) were used in this study.
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3

Western Blot Analysis of KSHV Proteins

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Western blot analysis was carried out as described previously (47 (link)). Briefly, protein samples were resolved on an 8% to 12% polyacrylamide gel and then transferred onto a polyvinylidene difluoride (PVDF) membrane (Bio-Rad) where the target protein was probed with a specific antibody. All Western blot analyses done in the study were performed using at least two independent sets of cell lysates, and similar results were obtained across all experiments. The anti-ORF50 antibody was generated as described previously (48 (link)). Antibodies to FLAG (A8592; Sigma), K8 (sc-57889; Santa Cruz), ORF45 (sc-53883; Santa Cruz), K8.1 (sc-65446; Santa Cruz), LANA (13-210-100; Advanced Biotechnologies), RBP-Jκ (sc-271128; Santa Cruz), KAP1 (ab-22553; Abcam), Nrf2 (sc-722; Santa Cruz), HIF-1α (610958; BD Biosciences), Fos (sc-52; Santa Cruz), Jun (sc-1694; Santa Cruz), phospho-Jun (13-2100; Advanced Bioteck, Inc.), SP1 (CS200631; Millipore), hemagglutinin (901501; BioLegend), NEDD8 (PA5-17476; Thermo Fisher), cullin 1 (sc-11384; Santa Cruz), PARP (9532; Cell Signaling), cleaved caspase-3 (9664; Cell Signaling), and actin (sc-47778; Santa Cruz) were purchased commercially.
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4

Immunofluorescence Staining of Nuclear Proteins

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Cells were seeded on coverslips in a 24-well plate, washed with PBS (Biological Industries, Israel), and fixed with 4% formaldehyde in PBS for 25 min at room temperature. After fixation, cells were washed with PBS, and permeabilized and blocked in PBS containing 0.2% Triton X-100% and 1% BSA. Slides were incubated with primary antibodies to UBF (Sigma/Santa Cruz, CA, USA), Fibrillarin (Abcam, Cambridge, UK), NPM (Abcam, Cambridge, UK), Nucleolin (Abcam, Cambridge, UK), RPA194 (Santa Cruz, CA, USA), PICT-1 (Santa Cruz, CA, USA), PML (Santa Cruz, CA, USA), ORF45 (Santa Cruz, CA, USA), ORF65 [64 (link)] (a kind gift from Shou Jiang Gao) or ORF59 (a kind gift from Prof. Bala Chandran, University of South Florida) [65 (link)] at 40 C, followed by incubation with secondary conjugated antibodies (Rhodamine, Cy3, Alexa Fluor 647 or Alexa Fluor 488, Jackson ImmunoResearch Laboratories, Inc., West Grove, PA) for 1 h at room temperature. To stain the nuclei, cells were incubated for 10-min with 0.05 µg/mL Hoechst dye (Sigma) in PBS. The slides were mounted with anti-fading medium (1% n-Propyl gallate, 90% Glycerol in PBS). Cells were examined and photographed under a confocal laser-scanning microscope (Leica SP8 Confocal Live Microscope).
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5

Western Blot Protein Detection

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The whole-cell lysates were resolved by SDS–PAGE, transferred to a polyvinylidene fluoride membrane and probed with primary antibodies against FLAG-M2 (1:2000; Sigma), MYC (1:2000; made in our laboratory), ORF45 (1:500; made in our laboratory), GFP (1:500; Santa Cruz Biotechnology), PARP-1 (1:1000, BD Biosciences) or α-tubulin (1:2000; Sigma). A goat anti-rabbit or goat anti-mouse immunoglobulin G antibody conjugated with horseradish peroxide (a secondary antibody; Santa Cruz Biotechnology) was detected using ECL plus Western blotting detection reagents (ELPIS), and the signals were analyzed on LAS-4000, a chemiluminescent image analyzer (Fujifilm).
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