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Pcd2.1 vector

Manufactured by Geneseed
Sourced in China

The PCD2.1 vector is a plasmid-based genetic engineering tool used for the cloning and expression of recombinant proteins. It provides a standardized platform for the insertion and propagation of genetic sequences in bacterial hosts. The core function of the PCD2.1 vector is to facilitate the stable maintenance and controlled expression of target genes.

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4 protocols using pcd2.1 vector

1

Regulation of circINSR and miR-15/16 family

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The second exon sequence of the INSR gene was inserted into the pCD2.1 vector (Geneseed Biotech, Guangzhou, China) and psi-CHECK2 vector (Promega, Fitchburg, WI, USA). Small interfering RNA (siRNA) oligonucleotides were designed to combine with the back-splice region of circINSR (RiboBio, Guangzhou, China). These siRNAs inhibited the expression of circINSR after transfection into the cell and was named si-circINSR. The mimics of bta-miR-15a, bta-miR-15b, bta-miR-16a, and bta-miR-16b were purchased from RiboBio (Guangzhou, China). The 3′-untranslated regions (UTRs) of the cyclin D1 (CCND1) and B-cell lymphoma 2 (Bcl-2) genes containing the miR-15/16 binding sites were amplified using the PCR enzyme mix (Platinum II Taq Hot-Start DNA Polymerase, Invitrogen). The wild-type and mutant 3'-UTR gene sequences were cloned into the psi-CHECK2 vector. The Renilla: Firefly ratio was measured and compared against that for the non-treated control. The mimics (50 nM) or vectors (2 μg/mL) were transfected into cells using a transfection reagent (R0531, Thermo Fisher Scientific, USA). For the overexpression of the miR-15/16 family, the miR-15a, miR-15b, miR-16a, and miR-16b mimics were mixed in equal amounts for transfection.
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2

Cloning and Overexpression of circNEB in Cells

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The full‐length cattle and mouse circNEB sequences were cloned by back‐to‐back primers, respectively, and cloning primers are listed in Table S3 (Supporting Information). The cloned fragments were linked to the pCD2.1 vector (Geneseed, Guangzhou, China) through Kpn I and BamH I restriction enzyme sites. The pCD2.1‐bos‐circNEB and pCD2.1‐mus‐circNEB vectors were obtained. pCD2.1‐bos‐circNEB vector was used to overexpress circNEB in fetal cattle myoblasts. pCD2.1‐mus‐circNEB vector overexpressed circNEB in C2C12 cells. Cas9 knockdown vector was constructed by applying px458 plasmid and ligated by restriction enzyme cleavage site Bbs1.[32 (link)
] The knockdown site was located within 1 kb bases of the intron on both sides of circNEB, and the corresponding sgRNA sequences have been listed in Table S3 (Supporting Information). The overexpression plasmid was transfected into the cells by Exfect Transfection Reagent (Vazyme, Nanjing, China). The transfection method was performed in reference to the instruction manual.
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3

Overexpression of circHUWE1 and miR-29b

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To overexpress circHUWE1 and miR-29b, the full-length cDNA of circHUWE1 or the primary (pri)-miR-29b fragment were separately cloned into the pcD2.1 vector (Geneseed, China) and the pcDNA3.1(+) vector (Invitrogen, USA), respectively. The siRNAs to target circHUWE1 and miR-29b inhibitors were synthesized by RiboBio (Guangzhou; China) to knock down circHUWE1 and miR-29b. The circHUWE1 full-length sequence with mutational sites pairing to the miR-29b seed region was also amplified using overlap PCR, and was then inserted into the pcD2.1 vector to construct the pcD2.1-circHUWE1-mut vector. Here, all vectors were verified by sequencing, and transfections were conducted with R0531 (Thermo Fisher Scientific, USA) according to the manufacturer’s instructions.
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4

Construction and Validation of circRNF111 Overexpression

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For construction of the circRNA overexpression vector, the full-length sequence of circRNF111 was amplified to construct the pCD2.1 vector (Geneseed, Guangzhou, China). The wild-type or the mutant full-length sequence of circRNF111 was inserted into the Xhol I-Not I restriction sites of the psiCHECK-2 vector (Promega, Fitchburg, WI, USA). An miR-27a-3p sensor (psiCHECK-2-miR-27a-3p 3×) was created by inserting three consecutive miR-27a-3p complementary sequences into the psiCHECK-2 vector. The wild-type or mutated 3’UTR fragment of PPARγ containing miR-27a-3p targeted site was cloned into the psiCHECK-2 vector at the 3’-end of the Renilla gene. Small interfering RNA (siRNA) oligonucleotides were designed to combine with the back-splice region. The miR-27a-3p mimics, inhibitors, and corresponding negative control (NC) were synthesized using RiboBio (Guangzhou, China). The mimics and inhibitors (50 nM), siRNA (50 nM), or vectors (2 µg/mL) were transfected into cells with Lipofectamine 2000 (Invitrogen).
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