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4 protocols using trizol buffer

1

qPCR Analysis of Apoptosis Regulators

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The qPCR experiments were performed as described previously [19 (link), 20 (link)]. The total RNA (Ribonucleic Acid) of cells were extracted using the Trizol buffer (Beyotime) and were reverse-transcribed by Multiscribe™ Reverse Transcriptase (Applied Biosystems, Thermo Scientific Corporation) according to the manufacturer’s instructions. The relative expression was calculated by the comparative Ct method. The primers used for qPCR analysis were shown in Table 1.

The primers used in this work

TargetsPrimer sequence (5′–3′)
MMP-9Forward: 5′-GGGACGCAGACATCGTCATC-3′
Reverse: 5′-TCGTCATCGTCGAAATGGGC-3′
BaxForward: 5′-TGAAGCGACTGATGTCCCTG-3′
Reverse: 5′-CAAAGATGGTCACGGTCTGC-3′
Caspase-3Forward: 5′-CCTGGTTCATCCAGTCGCTT-3′
Reverse: 5′-TCTGTTGCCACCTTTCGGTT-3′
Bcl-2Forward: 5′-GTGAAGTCAACATGCCTGCC-3′
Reverse: 5′-ACAGCCTGCAGCTTTGTTTC-3′
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2

Effect of Furosine on Reproductive Biomarkers

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Furosine was purchased from PolyPeptide (Strasbourg, France); the purity was above 95%. Dulbecco’s Modified Eagle Medium (DMEM), fetal bovine serum (FBS), and non-essential amino acids (NEAA) were obtained from GIBCO (Waltham, MA, USA), 1% penicillin/streptomycin was purchased from Thermo Fisher (Waltham, MA, USA). Lactoferrin was purchased from Sigma (St. Louis, MO, USA), with the purity of above 95%.
Cell counting kit-8 (CCK-8 kit) was purchased from Solarbio (Beijing, China), Elisa detection kits of T, FSH and LH in mice serum were purchased from Jiancheng (Nanjing, China). Hematoxylin-Eosin (HE) staining kit was purchased from Solarbio (Beijing, China).
Trizol buffer, RIPA lysate buffer (including proteases and PMSF), and protein concentration detection kit were obtained from Beyotime (Nanjing, China). Primers of GAPDH, Cep55, NF-κB, PI3K, Akt, FOX01 and TNF-α were synthesized from Sangon (Shanghai, China), reagents related with quantitative real time polymerase chain reaction (q-PCR) were purchased from Sangon. Primary antibodies of β-actin, Cep55, NF-κB, PI3K, p-PI3K, Akt, p-Akt, FOX01, p-FOX01, and TNF-α, as well as the secondary antibodies, were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Reagents related with western blotting were purchased from Solarbio. Enhanced chemiluminescence (ECL) reagent was purchased from Tanon (Shanghai, China).
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3

RNA Extraction and qPCR Analysis of KCs

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Total RNA of KCs (5 × 106) was extracted using Trizol buffer (R0016, Beyotime, China). The total RNA samples were reverse transcribed into cDNA strictly following the protocol of the Primescript™ RT reagent kit with the gDNA Eraser (RR047A, Takara, Japan). PCR was conducted using the SYBR premix Ex Taq II kit (RR820A, Takara, Japan). The relative expression of the targeted gene was determined using the –(delta delta C(T)) method after normalizing against the β-actin gene. The primers for the targeted genes are shown in Supplementary Figure 2.
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4

RNA Sequencing of DHOK-Treated SW620 Cells

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SW620 cells were seeded in 6-cm dishes overnight and treated with 12.5 μM DHOK for 24 h in a 5% CO2 incubator. The next day, 1 ml Trizol buffer (Beyotime, Shanghai, China) was used to lyse cells following the manufacturer’s procedure (Sun et al., 2020 (link)). The RNA sequencing (RNA-seq) experiments were undertaken by Lc-Bio Technologies Co., Ltd. (Hangzhou, China). The amount and purity of RNA was quantified by NanoDrop ND-1000 (NanoDrop, Wilmington, DE, United States). Then RNA was purified and fragmented. After that, RNA was reverse transcribed to cDNA, and next synthesized U-labeled second-stranded DNAs. An A-base was then added to the blunt ends of each strand and single- or dual-index adapters were ligated to the fragments. AMPureXP beads were used to size selection. The average insert size for the final cDNA library was 300 ± 50 bp. At last, the paired-end sequencing was performed.
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