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667 protocols using anti e cadherin

1

Analyzing Epithelial-Mesenchymal Transition Markers

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Cells were lysed in RIPA buffer and analyzed by Western blotting as described (Huang et al. 2014 ). Antibodies used for Western blotting were as follows: anti-CD44 (R&D Systems), anti-hnRNPF (Santa Cruz Biotechnology), anti-E-cadherin (Cell Signaling Technology), anti-γ-catenin (Cell Signaling Technology), and anti-vimentin (NeoMarkers). GAPDH (GE) was used as a loading control. For immunofluorescence, cells were fixed in 4% polyformaldehyde and permeabilized with 0.2% Triton X-100 before blocking with 5% BSA. Primary antibody incubations with rabbit anti-E-cadherin (1:200; Cell Signaling Technology) were performed overnight at 4°C followed by incubation with Alexa fluor 488-conjugated anti-rabbit IgG (1:500; Invitrogen) for 2 h at room temperature and DAPI staining. Representative images were captured under a Nikon C2 laser scanning confocal microscope.
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2

Antibody Characterization for Protein Analysis

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Mouse monoclonal anti-β-actin (catalogue no. FB075) antibody was obtained from Nanchang Focus Bioscience Co., Ltd, and the species specificity is human, mouse, rat and pig. Anti-E-cadherin (catalogue no. 14472) and Anti-p21 (catalogue no. 2947) antibodies were obtained from Cell Signalling Technology, Inc. (Danvers, MA, USA), the species specificity of Anti-E-cadherin is human, mouse and rat, and the species specificity of Anti-p21 is human and monkey. Anti-MORF4L1 (catalogue no. HPA042360) antibody was obtained from Sigma-Aldrich (Merck KGaA; Darmstadt, Germany), the species specificity of anti-MORF4L1 is human and rat.
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3

Quantitative Protein Expression Analysis

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Protein samples were extracted from cells using RIPA Lysis Buffer (Beyotime, Shanghai, China). The proteins were separated on 10% SDS-PAGE and transferred to a PVDF membrane. The membrane was blocked with 5% skimmed milk solution for 1 hour. The membrane was treated with the following primary antibodies: anti-PTEN (Cat. #9188, Cell Signaling Technology, Danvers, MA), anti-p-PTEN (Cat. #9549, Cell Signaling Technology), anti-Akt (ab8805, Abcam, MA, USA), anti-p-Akt (ab38449, Abcam), anti-E-cadherin (Cat. #3195, Cell Signaling Technology), anti-E-cadherin (Cat. #13116, Cell Signaling Technology) and anti-vimentin (ab92547, Abcam) and corresponding secondary antibodies conjugated with horseradish peroxidase. Protein bands were visualized using an enhanced chemiluminescence system (Millipore, Bedford, MA) and analyzed with Amersham image 800 (GE). The GAPDH protein (Cat. #5174, Cell Signaling Technology) served as the loading control.
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4

CD58 and Akt Modulators in Stem Cell

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Soluble CD58 (sCD58), AKT inhibitor (LY294002), and Akt activator (SC-79) were acquired from Med Chem Express (MCE, Shanghai, China). Anti-Oct4 (11263-1-AP), anti-Sox2 (66411-1-Ig), anti-CD24 (18330-1-AP), anti-vimentin (10366-1-AP), and anti-c-Myc (10828-1-AP) were purchased from Proteintech (Wu Han, China). Anti-EPCAM (#2626S), anti-E-cadherin (#3195S), anti-AKT (#9272S), anti-GSK-3β (#5676S), anti-Phospho-GSK-3β (Ser9) (5558S), anti-β-Catenin (#8480S), anti-non-phosphorylated (active) β-catenin (S33/37/T41) (#8814S), anti-phospho-β-Catenin (Ser552) (#9566S), and anti-cyclin D1 (#55506S) were acquired from Cell Signaling Technology. Anti-CD58 (A0806) and anti-phospho-AKT (Ser473) (AP0140) were purchases from ABclonal (Wu Han, China).
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5

Molecular Mechanisms of TGF-β1-Mediated Apoptosis

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Recombinant human TGF-β1 was purchased from R&D Systems (Minneapolis, MN, USA), emodin was obtained from Shanghai future industry Limited by Share Ltd (Shanghai, China) and BLM was acquired from Nippon Kayaku (Tokyo, Japan). The primary antibodies described in the study include: anti-E-cadherin, anti-vimentin, anti-cleaved caspase-3, anti-phospho-Smad2, anti-phospho-Smad3, anti-Smad2, anti-Smad3, anti-phospho-Erk1/2 and anti-Erk1/2 (Cell Signaling Technology, CA, USA); anti-caspase-3, anti-Bax (Santa Cruz Biotechnology, CA, USA); anti-fibronectin (Proteintech, Chicago, USA); anti-caspase-8, anti-Bcl-2 (Absci, MD, USA); anti-TGF-β1, anti-FSP-1, anti-α-SMA (Abcam, USA); and anti-GAPDH (Beyotime Institute of Biotechnology, Haimen, China). Other reagents were obtained from Beyotime Institute of Biotechnology unless otherwise indicated.
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6

Western Blot Analysis of Protein Markers

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Western blots were performed as previously described [11] (link). Briefly, as soon as the harvested cells were lysed and the supernatant was collected, 60 µg protein was loaded onto SDS-PAGE and transferred to polyvinylidene fluoride membranes (PVDF). Membranes were blocked with 5% skimmed milk for 1 hour and incubated overnight with one of the following primary antibodies: anti-PSMD10 (diluted at 1∶1,000; Sigma, St. Louis, MO, USA), anti-Twist2 (diluted at 1∶200; Abcam, Cambridge, UK), anti-Vimentin (diluted at 1∶500; Cell Signaling Technology, Beverley, MA, USA), anti-β-catenin (diluted at 1∶500; Cell Signaling Technology), anti-E-cadherin (diluted at 1∶500; Cell Signaling Technology) and anti-cyclin D1(diluted at 1∶500; Cell Signaling Technology) rabbit monoclonal antibody, followed by 1 hour of incubation with the appropriate secondary antibody (1∶5,000). The anti-GAPDH (Epitomics) rabbit monoclonal antibody was diluted to 1∶1,000 for use as a sample loading control.
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7

Western Blot Analysis of Signaling Pathways

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B16-F10 cells (2 × 106 cells per well) were seeded into a 10 cm dish for 24 h, and then cells were treated with different concentrations of PSS (12.5, 25, 50, 100 μg/mL) for 24 h. The medium was removed, and the cells were washed with PBS three times. Cells were then lysed in 200 μL of lysis buffer on ice. The total protein was determined using the Bicinchoninic Acid (BCA) Kit (Solarbio, Beijing, China). Equal amounts of protein in the cell extracts were fractionated by 10% SDS-PAGE, and then electrotransferred onto polyvinylidene fluoride (PVDF) membranes. After blocking with TBST (20 mM Tris-buffered saline and 0.1% Tween) containing 5% nonfat dry milk for 1 h at room temperature, the membranes were incubated for 2 h with monoclonal antibodies, such as anti-MMP-9, anti-MMP-2, anti-E-cadherin, anti-Vimentin, anti-ERK 1/2, anti-p-ERK 1/2, anti-AKT, anti-p-AKT (Ser473), anti-p38, anti-p-p38, anti-p-p38, anti-NF-κB, anti-p-NF-κB, and anti-β-actin, which were purchased from Cell Signaling Technology. The membranes were then washed three times and incubated with HRP-conjugated secondary antibodies (Abcam, Cambridge, Massachusetts, USA). The proteins were then detected using chemiluminescence agents (Amersham ECL, GE Healthcare, Buckinghamshire, UK).
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8

Epithelial-Mesenchymal Transition Induction

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PT was attained from Calbiochem (San Diego, CA, USA) and dissolved in dimethylsulfoxide (DMSO; Sigma, St. Louis, MO, USA) to obtain a concentration of 100 μM and then saved at –20°C in the dark. Growth factor-reduced Matrigel was purchased from BD Biosciences (San Diego, CA, USA). Recombinant human TGF-β1 protein was acquired from R&D Systems (Minneapolis, MN, USA) and was dissolved in Ultra-Pure Bovine Serum Albumin (GenDEPOT, Hanam, Korea) to obtain a concentration of 20 μg/mL and then stored at –20°C. Anti-E-cadherin, anti-β-catenin, and anti-Vimentin were from Cell Signaling Technology (Danvers, MA, USA). Anti-Slug and anti- Snail were from Abcam (Cambridge, UK). Anti-Actin was obtained from Sigma-Aldrich (St. Louis, MO, USA).
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9

Comprehensive Protein Expression Profiling of Extracellular Vesicles

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Protein extracts were boiled in RIPA buffer (Beyotime) and separated by sodium dodecyl sulfate–polyacrylamide electrophoresis gel electrophoresis (SDS‐PAGE). The proteins were then transferred to polyvinylidene fluoride membranes (Millipore) and probed with anti‐CD9, anti‐CD63, anti‐ALIX, anti‐TSG101, anti‐EGFR, anti‐FXR1, anti‐TLR‐4, anti‐MMP2, anti‐TGF‐β1, anti‐phospho‐STAT5, anti‐STAT5, anti‐phospho‐ERK1/2, anti‐ERK1/2, anti‐phospho‐AKT, anti‐AKT, anti‐Ki‐67, anti‐PTEN (Abcam), anti‐Bcl‐2, anti‐Bax, anti‐E‐Cadherin, anti‐Vimentin, and anti‐GAPDH antibodies (Cell Signaling Technology). Electrochemiluminescence (Millipore) was applied to determine protein expression levels.
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10

Quantitative Immunoblotting and Immunofluorescence

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Primary antibodies used were anti-γH2AX (#2577, Cell Signaling), anti-GAPDH (MAB374, Millipore), anti-CAD (PA5-19913, Thermo Fisher), anti-STING (#13647, Cell Signaling), anti-phospho-STING (#19781, Cell Signaling), anti-ICAD (#9732, Cell Signaling), anti-cGAS (#79978, Cell Signaling), anti-E-cadherin (#3195, Cell Signaling) and anti-α-tubulin(T9026, Sigma–Aldrich). Secondary antibodies were (Western blotting) anti-rabbit IgG(H + L)-HRP (A6667, Sigma-Aldrich), anti-mouse IgG(H + L)-HRP (115-035-166, Dianova), (immunofluorescence) anti-mouse IgG(H + L)-Cy5 (715-175-151, Dianova) and anti-rabbit IgG(H + L)-Alexa488 (711-545-152, Dianova).
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