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Glucose 6 phosphate (g6p)

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Glucose-6-phosphate is a chemical compound that plays a crucial role in cellular metabolism. It is an intermediate in the glycolysis pathway, which is the process of breaking down glucose to generate energy for the cell. Glucose-6-phosphate is the product of the first step in glycolysis, where glucose is phosphorylated by the enzyme hexokinase. This compound is a key component in various biochemical processes, including energy production, glucose storage, and the pentose phosphate pathway.

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265 protocols using glucose 6 phosphate (g6p)

1

Antibiotic Susceptibility Testing Protocol

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The minimal inhibitory concentrations (MIC) values were tested. MICs of fosfomycin, gentamicin and amikacin were determined by broth microdilution method as recommended by the Clinical Laboratory Standard Institute (CLSI) (19 ), using Mueller Hinton broth II (MHB) (Becton Dickinson & Co., Sparks, MD, United States) supplemented or not with 25 mg/L of glucose-6-phosphate (G-6-P) (Sigma-Aldrich, Madrid, Spain) and agar dilution method using Mueller Hinton agar supplemented with G-6-P for fosfomycin. MIC of fosfomycin was also determined by the broth microdilution method using MHB supplemented with G-6-P. MIC results were interpreted according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST) (http://www.eucast.org/clinical_breakpoints/) breakpoints for all antibiotics (20 ). Studies were performed in triplicate to ensure reproducibility.
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2

Assessing Enzyme Activities in Cellular Extracts

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Enzyme activities (1–2 mg protein/mL, 240 µL final volume, normalised for protein content by Bradford assay) were assessed at 37°C over 20 min. Residual aldehyde was not removed prior to assay as pilot studies showed no interference (data not shown). For G6P utilising enzymes (G6PD +6PGD+H6PD) reaction mixtures contained 25 mM Tris-HCl (pH 7.4), 5 mM MgCl2, 5 mM G6P (Merck) and 0.5 mM NADP+ (Roche). H6PD activity was determined using 2-deoxyglucose-6-phosphate (dG6P). The combined contribution of G6PD +6PGD+H6PD was assessed using fructose-6-phosphate (F6P), whereby phosphoglucose isomerase initially converts F6P to G6P. IDH activity was measured with 25 mM Tris-HCl (pH 7.4), 5 mM MgCl2, 5 mM isocitrate and 0.5 mM NADP+. ME activity was measured with 25 mM Tris-HCl (pH 7.4), 5 mM MgCl2, 5 mM l-malic acid disodium salt (Research Organics, Cleveland, OH, USA) and 0.5 mM NADP+.
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3

Antioxidant Assays Protocol

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Analytical grade chemicals used: sodium carbonate, sodium nitrite, dosium dihydrogen, hydrogen peroxide, ferrous chloride, 2-deoxyribose, potassium ferricyanide, sulphuric acid were bought from Merck. 1,1-diphenyl-2-picryl-hydrazyl, potassium persulphate, 2-ethylbenzothiazoline sulfonic acid, rutin, nitro blue, Folin-Ciocalteu’s reagent, phenazine methosulphate, trichloroacetic-acid and tetrazolium were obtained from Sigma Chemicals Co., St. Louis USA. Oxidized glutathione (GSSG), (DTNB), glutathione (GSH),1,2-dithio-bis-nitroLbenzoic-acid (DTNB), glucose-6-phosphate, thiobarbituric acid (TBA), trichloroacetic acid (TCA), sodium tungstate, perchloric acid (PCA), 2,6-dichlorophenolindophenol, reduced glutathione (GSH), sodium hydroxide, reduced nicotinamide adenine dinucleotide phosphate (NADPH), sodium tungstate, glucose-6-phosphate, rutin, catechin, gallic acid, caffeic acid, apigenin, quercetin, myricetin, and kampferol were bought from Sigma Chemicals Co., USA were used.
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4

In Vitro Analysis of Pentose Phosphate Pathway Enzymes

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In vitro enzyme activity assays were performed as previously described76 (link). Briefly, for glucose 6-phosphate dehydrogenase activity, the following substrates were re-constituted in vitro in PPP activity buffer (50 mM Tris, 1 mM MgCl2): 200 μM glucose 6-phosphate (Sigma) and 100 μM NADP + (Roche). In all, 10 μg of protein lysate from PDZK1IP1-V5 or EV expressing cells were added to the reaction mixture. Reduction of NADP + to NADPH was read by absorption at 340 nm on a spectrophotometer as a readout of glucose 6-phosphate dehydrogenase activity. For 6-phosphogluconate dehydrogenase activity, the following substrates were re-constituted in vitro in. PPP activity buffer: 200 μM 6-phosphogluconate (Sigma) and 100 μ M NADP + (Roche). 10 μ g of protein lysate from PDZK1IP1-V5 or EV expressing cells were added to the reaction mixture. Reduction of NADP + to NADPH was read by absorption at 340 nm on a spectrophotometer as a readout of 6-phosphogluconate dehydrogenase activity.
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5

In Vitro Heme Oxygenase Assay

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An in vitro heme oxygenase assay was performed according to a previous study (25 (link), 26 (link)). The following reagents were mixed and incubated at 25°C for 8 hours in a final volume of 100 μl: 5 μM recombinant AtHO1, 40 μM hemin (Tokyo Chemical Industry, catalog no. H0008), bovine serum albumin (60 μg/ml; Merck, catalog no. A9647), 4.6 μM ferredoxin (Merck, catalog no. F5875), ferredoxin-NADP+ reductase (0.025 U/ml; Merck, catalog no. F0628), 10 μM catalase (Merck, catalog no. 219261), 6.5 mM glucose-6-phosphate (Merck, catalog no. 10127647001), G6PD (Merck, catalog no. G7877), 0.82 mM NADP+ (Wako, catalog no. 308-50463), and 5 mM sodium ascorbate (Tokyo Chemical Industry, catalog no. A0539). These reagents were dissolved in 100 mM potassium phosphate buffer (pH 7.2) or DMSO according to the previous study (26 (link)). The reactions were stopped and their proteins removed by mixing water (reaction solution), methanol, and chloroform to a 0.9:1:1 ratio. Following centrifugation at 13,000g for 5 min, the upper layer was collected, dried, and then dissolved in 10 μl of DMSO. In Fig. 2E, biliverdin was added in place of AtHO1, hemin, and the indicated enzymes or coenzyme. The reaction products were mixed with an equal volume of 10 μM apoUnaG, and UnaG florescence was observed under blue light.
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6

HPLC Extraction of Glucocorticoids

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All HPLC grade solvents used in the extraction protocol and glucose-6-phosphate were obtained from Merck (Darmstadt, Germany). Ultrapure water was obtained using an Arium®-pro ultrapure system (Sartorius, Goettingen, Germany). Dimethyl sulfoxide (99.9%), cortisone, hydrocortisone, carbenoxolone disodium salt, and glucose 6-phosphate dehydrogenase were purchased from Sigma-Aldrich (St. Louis, MO, USA). Mixed gender pooled human liver microsomes were purchased from Sekisui XenoTech (Kansas, KS, USA). NADP+/H was obtained from Cayman Chemical (Ann Arbor, MI, USA).
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7

Mutagenicity Assessment of Zolav® in Rats

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Zolav® was provided by Boulos & Cooper Pharmaceuticals Pty Ltd (Port Adelaide, SA, Australia) and stored until needed. Aroclor 1254-induced male Sprague Dawley rat liver S9 was purchased from Molecular Toxicology, Inc. (Boone, NC, USA) (Cat# 11-01L.2). β-nicotinamide adenine dinucleotide phosphate, 2-Aminoanthracene and tryptophan were purchased from Sigma-Aldrich Co. (St Louis, MO, USA). glucose-6-phosphate, glucose, dimethyl sulfoxide (DMSO) and potassium dichromate were purchased from Merck Millipore (Billerica, MA, USA), and magnesium chloride, potassium phosphate dibasic, potassium chloride, sodium dihydrogen phosphate and sodium chloride were purchased from Wako Pure Chemical Industries, Ltd (Osaka, Japan). Bacto agar (DIFCO, Carolina Biological Supply Company, Burlington, NC, USA), bottom agar (containing 1.5% bacto agar, 2% glucose, and 2% Vogel-Bonner salt), nutrient broth (Oxoid Ltd, Hampshire, England), and top agar (0.6% bacto agar and 0.5% NaCl supplemented with 0.025 mM tryptophan) were stored according to the manufacturer’s instructions until needed.
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8

NADPH Activity Assay Protocol

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NADPH activity assay was described in our and other studies [18 (link), 37 ]. Briefly, after treatment of cells, the lysates were incubated with NADP-cycling buffer plus glucose-6-phosphate dehydrogenase (G6PD, Sigma) at 60°C for 30 min [18 (link)]. Afterwards, glucose 6-phosphate (G6P, Sigma) was added to the mixture, and the change in absorbance at 570 nm was measured every 30 s for 4 min at 30°C. The concentration of NADP+ was calculated by subtracting [NADPH] from [total NADP]. NADPH activity was then calculated through NADPH/ NADP+ [37 ].
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9

Colorimetric Assay for NAD+ Detection

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NAD+ and G6P purchased from Sigma-Aldrich (St. Louis, MO, USA) were reagent-grade. 1-Ethyl-3-[3-dimethylaminopropyl] carbodiimide hydrochloride (EDC) and poly-l-lysine (PLL) were purchased from Solarbio (Beijing, China). Multi-wall carbon nanotubes modified with carboxyl groups (Cheap Tubes Inc, Cambridgeport, VT, USA) were well dispersed in a 50% ethanol solution with a concentration of 5 mg mL−1. All other chemicals were analytical reagent grade and purchased from Sinopharm Chemical Reagent Co., Ltd (Shanghai, China). E. coli Top10 was used for DNA manipulation, and BL21 (DE3) containing a protein expression plasmid was used to produce the recombinant enzymes. E. coli cell growth and recombinant protein expression were performed in Luria–Bertani medium containing either 50 mg L−1 kanamycin or 100 mg L−1 ampicillin at 37 °C. Glucose-6-phosphate dehydrogenase (G6PDH) and diaphorase (DI) were purified using heat precipitation as described elsewhere.1 (link)
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10

Structural Determination of CnTps1 Enzyme

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6xHis-CnTps1 was purified as described above and concentrated in a buffer containing 20 mM Tris pH 8.0, 300 mM NaCl, 5% glycerol and 2 mM β-mercaptoethanol. For grids prepared with apo CnTps1, 3 μL of 0.75 mg/mL 6xHis-CnTps1 was applied to glow-discharged carbon Quantifoil grids. After a 15 s incubation, the grids were blotted for 2 s to remove excess protein and rapidly plunged into liquid ethane (−182 °C) using a Leica EM GP2 (Leica Microsystems) operated at 95% humidity and 22 °C. For determination of the structure of the CnTps1-UDP-G6P complex, 0.5 mg/mL 6xHis-CnTps1 was incubated with 10 mM uridine di-phosphate (UDP, Sigma) and 10 mM glucose-6-phosphate (G6P, Sigma) for 18 hours at 4 °C. 3 μL of the CnTps1-UDP-G6P mixture was deposited onto glow-discharged UltrAuFoil grids. After a 15 s incubation, the grids were blotted for 2 s to remove excess protein and rapidly plunged into liquid ethane (−182 °C) using a Leica EM GP2 (Leica Microsystems) operated at 95% humidity and 22 °C. Grids were transferred to liquid nitrogen for storage until data collection.
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