The largest database of trusted experimental protocols

Karmali agar

Manufactured by Thermo Fisher Scientific
Sourced in Germany, United Kingdom

Karmali agar is a selective and differential medium used for the isolation and identification of Campylobacter species from clinical and food samples. It contains antibiotics that inhibit the growth of competing bacteria, allowing Campylobacter to grow selectively. The medium also includes selective agents that differentiate Campylobacter colonies based on their characteristic appearance.

Automatically generated - may contain errors

46 protocols using karmali agar

1

Quantifying Campylobacter Loads in Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Campylobacter jejuni loads were surveyed in fecal samples over time p.i., and upon necropsy in luminal samples taken from the stomach, duodenum, ileum and colon as well as in homogenates of ex vivo biopsies derived from MLN, spleen, liver, kidney and lung as well as in cardiac blood samples by culture as described previously [13 (link), 56 (link)]. In brief, intraluminal gastrointestinal samples and respective ex vivo biopsies were homogenized in sterile PBS with a pistil and serial dilutions plated onto karmali agar (Oxoid, Wesel, Germany) and incubated in a microaerophilic atmosphere for at least 48 h. Cardiac blood (0.2 ml) was immediately streaked onto karmali agar plates. The detection limit of viable pathogens was approximately 100 CFU/g.
+ Open protocol
+ Expand
2

Characterizing C. jejuni Systemic Spread

Check if the same lab product or an alternative is used in the 5 most similar protocols
Six days following C. jejuni infection, the pathogen loads were determined in samples from the stomach, duodenum, ileum, and colon and furthermore, in ex vivo biopsies taken from the MLN, liver, kidneys, lungs, and spleen by culture as described earlier [15 (link)]. In brief, respective samples were homogenized in sterile PBS (Thermo Fisher Scientific, Waltham, MA, USA) with a sterile pestle, serial dilutions plated onto karmali agar (Oxoid, Wesel, Germany) and incubated under microaerophilic conditions for at least 48 h and 37 °C. The detection limit of viable pathogens was 100 CFU per g (CFU/g). In order to assess systemic spread of C. jejuni, thioglycollate enrichments broths (BD Bioscience, Heidelberg, Germany) were inoculated with approximately 200 µL of cardiac blood upon necropsy, incubated at 37 °C for one week and streaked onto karmali agar (Oxoid, Wesel, Germany) for further cultivation of C. jejuni [15 (link), 25 ]. The bacterial translocation frequencies were calculated by the percentage of C. jejuni culture-positive samples out of the total number of analyzed samples taken from respective organ of mice (in %).
+ Open protocol
+ Expand
3

Murine Campylobacter coli Colonization

Check if the same lab product or an alternative is used in the 5 most similar protocols
The C. coli strain was initially isolated from a patient displaying bloody diarrhea and kindly provided by Dr. Torsten Semmler (Robert-Koch-Institute Berlin, Berlin, Germany). The pathogen strain was stored at −80 °C. Prior to infection, C. coli were freshly cultivated on columbia agar (supplemented with 5% sheep blood) and karmali agar plates (both from Oxoid, Wesel, Germany) after thawing from the stock. On two consecutive days (i.e., days 0 and 1), hma mice were perorally challenged with 108 colony forming units (CFU) of either the C. coli patient isolate or received vehicle (i.e., PBS) by gavage. In order to assess intestinal colonization properties, C. coli loads were enumerated in fecal samples collected over time post-infection and in luminal samples derived from distinct parts of the gastrointestinal tract (i.e., from the stomach, duodenum, ileum and colon) upon necropsies by culture as stated elsewhere [19 (link),64 (link)]. In brief, for C. coli quantification, serial dilutions of samples were plated onto columbia agar plates containing 5% sheep blood and karmali agar plates (both from Oxoid, Wesel, Germany) and incubated in a jar under microaerophilic conditions for 48 h at 37 °C.
+ Open protocol
+ Expand
4

Campylobacter jejuni Induced Colitis

Check if the same lab product or an alternative is used in the 5 most similar protocols
On days 0 and 1, the microbiota-depleted 3-month-old mice (total number of n = 36) were subjected to 109 colony forming units (CFU) of C. jejuni strain 81–176 (oral gavage). Therefore, the enteropathogens were derived from frozen stocks and streaked onto karmali agar and on columbia agar (supplemented with 5% sheep blood) plates (both from Oxoid, Wesel, Germany) two days prior respective infections (i.e., day-2 and day-1). The culture media were incubated in a box at 37 °C (microaerophilic conditions, CampyGen gas packs, Oxoid, Wesel, Germany). Two days later, bacteria from one fluently grown karmali agar plate were harvested in 5 mL sterile phosphate-buffered saline (PBS; Thermo Fisher Scientific, Waltham, MA, USA) to an approximate McFarland density of 3 (i.e., OD of 0.6 at 600 nm wavelength) resulting in a yield of 109 víable C. jejuni cells in a volume of 0.3 mL used for subsequent gavage. The yields were reconfirmed by cultural analyses of serial dilutions of the bacterial suspensions on respective solid culture media. The following cohorts of age- and sex-matched microbiota-depleted IL-10−/− mice (individual numbers in parentheses) were finally included in three independent C. jejuni infection experiments: (i) naive (non-infected, non-treated) mice (6/5/5); (ii) C. jejuni-infected, placebo-treated mice (6/6/6); (iii) C. jejuni-infected, butyrate-treated mice (6/6/6).
+ Open protocol
+ Expand
5

Murine Model of Campylobacter Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
For infection experiments, C. jejuni strain 81–176 was thawed from a stock and cultivated on columbia agar (supplemented with 5% sheep blood) and karmali agar plates (both from Oxoid, Wesel, Germany). Microbiota-depleted IL-10−/− mice were infected orally with 109 CFU in a volume of 0.3 mL phosphate buffered saline (PBS; Thermo Fisher Scientific, Waltham, MA, USA) by gavage on days 0 and 1, as stated earlier [33 (link)]. For a kinetic assessment of the intestinal colonization efficacies of the pathogen, C. jejuni loads were enumerated in fecal samples every day post-infection, and in luminal samples obtained from the stomach, duodenum, ileum and colon) upon necropsy (i.e., day 6 p.i.) by culture, as described previously [33 (link)]. In brief, serial dilutions of respective samples were streaked onto columbia agar plates containing 5% sheep blood and karmali agar plates (both from Oxoid, Wesel, Germany), and incubated in a jar under microaerophilic conditions for 48 h at 37 °C.
+ Open protocol
+ Expand
6

Isolation and Identification of Campylobacter

Check if the same lab product or an alternative is used in the 5 most similar protocols
In the laboratory, caecal samples were streaked directly onto two selective solid media: Karmali agar (Oxoid, UK) and Campylobacter blood-free agar (Oxoid) with CCDA selective supplement (Oxoid). The swabs from carcasses were placed in 5 ml of Bolton enrichment broth (Oxoid, UK) supplemented with 5% lysed horse blood and modified Bolton broth supplement. The cultures from both types of samples were incubated at 41.5 o C for 48 h under microaerobic conditions using the CampyGen kit (Oxoid). Campylobacter bacteria were isolated and identified according to the ISO 10272-1:2006 standard. Briefly, after the enrichment step, the cultures from swab samples were plated onto Karmali agar (Oxoid) and Campylobacter blood-free agar (Oxoid) with CCDA selective supplement (Oxoid) and incubated at 41.5 o C for 48 h under microaerobic conditions. The plates with caecal and carcass bacterial cultures were then examined for morphologically typical Campylobacter colonies (grayish, often with a metallic sheen, flat, and moist with a tendency to spread) and from each sample, one presumptive Campylobacter isolate was confirmed by PCR assay as previously described (Wieczorek et al. 2013) . Furthermore, the isolated strains were identified as C. jejuni or C. coli by PCR (Wieczorek and Osek 2005) .
+ Open protocol
+ Expand
7

Quantification of Pathogenic Loads

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pathogenic loads were surveyed in fecal samples at defined time points p.i., and upon necropsy in luminal samples derived from the colon, ileum, duodenum and stomach and additionally, in ex vivo biopsies taken from mesenteric lymph nodes (MLN), spleen, lungs, liver, and kidneys by culture as reported earlier [36 (link),38 (link)]. Briefly, by using sterile pestles respective samples were homogenized in sterile PBS (Thermo Fisher Scientific, Waltham, MA, USA). Serial dilutions were then streaked onto karmali agar and Columbia agar (supplemented with 5% sheep blood; both from Oxoid, Wesel, Germany) and incubated in a jar containing CampyGen gas packs (Oxoid, Wesel, Germany) under microaerophilic conditions at 37 °C for at least 48 h. In order to survey systemic translocation, cardiac blood (0.1 mL) was directly plated onto Columbia agar (supplemented with 5% sheep blood) and incubated likewise. The detection limit of viable pathogens was 100 CFU per g.
+ Open protocol
+ Expand
8

Isolation and Identification of Campylobacter

Check if the same lab product or an alternative is used in the 5 most similar protocols
Upon arrival at the laboratory, samples were inoculated into Bolton Broth (Oxoid, Basingstoke, UK), containing the Bolton selective supplement for enrichment, and then incubated at 42 °C for 24 h in a microaerobic environment (5% O2, 10% CO2, and 85% N2), with GENbox generators (BioMérieux, Craponne, France). After enrichment, putative Campylobacter-positive samples were streaked on Karmali agar (Oxoid, Basingstoke, UK) and incubated under the same conditions as described above for 48 h [24 (link)]. From each sample, suspected colonies were examined for the typical morphology and motility of Campylobacter, under a light microscope and using the oxidase/catalase tests. Thereafter, presumed Campylobacter colonies were subjected to PCR analysis for genus confirmation and species identification. Confirmed Campylobacter isolates were conserved at −80 °C in Mueller–Hinton broth containing 25% glycerol (v/v).
+ Open protocol
+ Expand
9

Quantification of Campylobacter jejuni Loads

Check if the same lab product or an alternative is used in the 5 most similar protocols
After C. jejuni infection, the pathogen loads were determined in fecal samples daily, and upon necropsy in luminal samples from the stomach, duodenum, ileum, and colon by culture as described previously [39 (link),41 (link)]. In brief, intraluminal gastrointestinal samples were homogenized in sterile phosphate-buffered saline (PBS, Thermo Fisher Scientific, Waltham, MA, USA) with a sterile pistil and serial dilutions plated onto Karmali agar (Oxoid, Wesel, Germany) and incubated under microaerophilic conditions for at least 48 h (37 °C). The detection limit of viable pathogens was 100 CFU per g.
+ Open protocol
+ Expand
10

Murine Campylobacter jejuni Infection Model

Check if the same lab product or an alternative is used in the 5 most similar protocols
For infection, a stock solution of C. jejuni 81–176 strain that had been stored at −80°C was thawed, aliquots streaked onto karmali agar (Oxoid, Wesel, Germany) and incubated in a microaerophilic atmosphere at 37°C for 48 h. Immediately before peroral infection of mice, bacteria were harvested in sterile PBS to a final inoculum of 109 bacterial cells.
Female and male hma mice (4 months of age) were perorally infected by gavage (in a total volume of 0.3 mL PBS) on 2 consecutive days starting on day (d) 0 and d1 (Figure 1). C. jejuni loads were monitored in fecal samples over time post-infection as reported previously (15 (link), 25 (link)). In brief, serial dilutions of fecal samples were dissolved in sterile PBS, streaked onto karmali agar and quantitatively assessed 48 h following incubation in a microaerophilic atmosphere at 37°C. The detection limit of viable pathogens was ≈100 CFU per g.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!