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31 protocols using fitc anti mouse cd11b

1

Phenotypic Analysis of Murine Myeloid Cells

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Splenocytes were cultured in RPMI 1640 medium (from Fisher Scientific, Waltham, MA) supplemented with 10% fetal bovine serum, 50 units/mL penicillin, and 50 µg/mL streptomycin (from Fisher Scientific, Waltham, MA). Lipopolysaccharide (LPS) was obtained from Sigma-Aldrich (Burlington, MA). The following antibodies were obtained from Biolegend (San Diego, CA) and used for flow cytometry analysis: FITC anti-mouse CD11b (clone: 29F.1A12), PE-CF594 anti-mouse F4/80 (clone:BM8), PerCPCy5.5 anti-mouse CD11c (clone: N418), PE anti-mouse CD86 (clone: GL-1), BV421 anti- mouse MHC-class II (clone: M5/114.15.2). The following antibodies were obtained from Biolegend (San Diego, CA) and used for flow cytometry analysis: FITC anti-mouse CD11b (clone: 29F.1A12), PE-CF594 anti-mouse F4/80 (clone: T45-2342), BV605 anti-mouse Ly6C (clone: HK1.4), BV711 anti-mouse Ly6G (clone: 1A8) PerCPCy5.5 anti-mouse CD11c (clone: N418), PE anti-mouse CD86 (clone: GL-1), BV421 anti- mouse MHC-class II (clone: M5/114.15.2).
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2

Isolation of MDSCs and CD8+ T Cells from Tumor-Bearing Mice

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Male BALB/c mice aged 4–5 weeks were inoculated with CT26 cells to obtain tumor‐bearing mice according to the protocol of animal model. Two weeks after CT26 cells inoculation, mice were sacrificed and spleens were collected to filter through a 70 µm filter to prepare a single cell suspension. Then, mononuclear cells were obtained using a lymphocyte separation medium. MDSCs were isolated using the antimouse Gr‐1‐Biotin antibody and antibiotin MicroBeads (Miltenyi Biotech, Germany) according to the protocol of the MDSC‐kit. The purity of isolated MDSCs was identified by staining with antimouse CD11b‐FITC (BioLegend, USA) and antimouse Gr‐1‐PE/Cy7 (BioLegend, USA) antibodies and further detected by flow cytometry. For CD8+ T cells purification, normal BALB/c mice aged 4–5 weeks were sacrificed and spleens were collected to filter through a 70 µm filter to prepare a single cell suspension. Similarly, mononuclear cells were obtained using lymphocyte separation medium and CD8+ T cells were directly isolated using the anti‐CD8a (Ly‐2) MicroBeads (Miltenyi Biotech, Germany) according to the protocol. The purity of isolated CD8+ T cells was identified by incubating with antibodies of antimouse CD3‐PerCP/Cyanine 5.5 (BioLegend, USA) and antimouse CD8‐APC (BioLegend, USA) and measured by flow cytometry analysis.
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3

Isolation and Analysis of Infiltrating Immune Cells

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Single cells were prepared as previously described (Henry et al., 2009 (link); Xin et al., 2018 (link)) with minor modifications. Briefly, the ipsilateral cortex was quickly removed and immersed into PBS containing 0.2% BSA (w/v) on ice. The cortices of each group were gently ground on the 70 μm cell strainer at 4°C. Then, homogenates were filtered by passing through a 70 μm cell strainer. The cell suspension was centrifuged at 400 × g for 10 min to obtain precipitation, and the cells were re-suspended with 40% Percoll solution, followed by the addition of 75% Percoll solution at the bottom, and centrifuged at 500 × g for 20 min. Cells were collected from two density gradient interfaces and incubated by these antibodies for 30 min at 4°C: anti-mouse CD45-APC (10311, Biolegend) or anti-mouse CD11b-FITC (101206, Biolegend), to evaluate the populations of infiltrating monocytes/neutrophils (CD11b+/CD45high cells). Flow cytometric analysis was performed with use of FACS flow cytometer C6 (BD Biosciences). CD11b+ cell populations were further gated for CD45 expression and divided into a low (microglia) and high population (infiltrating monocytes/neutrophils).
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4

Comprehensive Immune Cell Profiling in BALF and Lung Tissues

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To detect the activation of the Jurkat cell line, we used anti-human CD69 PE (BioLegend). To analyze the phenotype of mouse eosinophils in BALF or lung tissues, we used anti-mouse CD45 PE-CY7 (BioLegend), anti-mouse SiglecF PE (BD), anti-mouse F4/80 APC-CY7 (BioLegend), anti-mouse CD11b FITC (BioLegend) and anti-mouse CD11c APC (BioLegend). To detect mIL-5Rα positive cells, we used anti-mouse CD125 AF488 (BD). To detect mIL-5-anchored CCAR and hIL-5-anchored CCAR, we used anti-mouse/human IL-5 PE (BioLegend) or anti-HA.11 Epitope Tag AF647 (BioLegend). To detect anti-hIL-5Rα CAR, hCCL11-anchored CCAR, and hCCL24-anchored CCAR, we used anti-HA.11 Epitope Tag AF647 (BioLegend).
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5

Immune Cell Profiling by Flow Cytometry

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After overnight culture, AMs, IMs, and PMs were harvested using trypsin (Gibco-Invitrogen) and kept at 4°C during all further steps. Cells were pelleted by centrifuging for 10 min at 300 x g, and resuspended in PBS containing 2% FBS, to block for 1 h. Next, DAPI (for dead cell exclusion) and primary antibodies: anti-mouse F4/80-Alexa Fluor 700 (diluted 1:100; Biolegend), anti-mouse Siglec-F-PE (1:100; Biolegend), anti-mouse CD11b-FITC (1:100; Biolegend), anti-mouse Cx3cr1-APC (1:100; Biolegend) and anti-mouse CD11c-Brilliant Violet 510 (1:100; Biolegend) were added to cells and incubated for 1 h in the dark. After staining, cells were washed twice, and kept in 2% FBS-containing PBS in the dark until flow cytometric analysis. Fluorescent staining was measured on an LSRFortessa cell analyzer (BD Biosciences), and data were analyzed using FlowJo v10 software (Tree Star, Inc.).
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6

Multiparameter Flow Cytometry Analysis

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HLJD decoction was prepared as above and stored at − 20 °C. The following flow cytometric antibodies were obtained from Biolegend (San Diego, CA, USA): anti-mouse CD45-APC/Cy7 (Cat#157,617), anti-mouse F4/80-PE (Cat#123,110), anti-mouse CD11b-FITC (Cat#101,206), anti-mouse CD11c-PE/Cy7 (Cat#117,318), anti-mouse CD8a-FITC (Cat#155,004), anti-mouse CD4 PerCP/Cy5.5 (Cat#100,434) and anti-mouse CD3ε-PE/Cy7 (Cat#155,706). Fixable Viability Stain (FVS) 700 was purchased from BD Bioscience (San Jose, CA, USA, Cat#564,997). Primary antibody against mouse TLR7 was purchased from Proteintech (Wuhan, China), and secondary antibodies and DAPI were obtained from Servicebio (Wuhan, China). ROS staining solution (Cat#D7008) was purchased from SIGMA (St. Louis, MO, USA). Mouse anti-PD-1 antibody and anti-CTLA-4 antibody were purchased from Bioxcell (Lebanon, NH, USA).
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7

Multicolor Flow Cytometry Analysis

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Blood leukocytes and tissue-infiltrating leukocytes were stained with fluorochrome-conjugated monoclonal antibodies and then analyzed by multicolor flow cytometry. Isotype-matched antibodies were used with all the samples as controls. The antibodies used in this study are listed as follows: anti-human-CD14-FITC (#301804), anti-human-CD45-PE/Cy7 (#304016), anti-mouse-CD11b-FITC (#101206), and anti-mouse-F4/80-PE/Cy7 (#123114) were ordered from BioLegend (San Diego, CA, USA). Anti-human-TREM-1-PE (#FAB1278P) and anti-mouse-TREM-1-PE (#FAB1187P) were purchased from R&D Systems (Minneapolis, MN, USA). All of the samples were detected on a FC-500 machine (Beckman Coulter; Fullerton, CA, USA) and analyzed using FlowJo software (Stanford University, Stanford, CA, USA).
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8

Comprehensive Multicolor Immune Profiling

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Anti-PD-L1 (ab213480, Abcam), anti-GAPDH antibody (2118, CST), anti-Phospho-TBK1/NAK antibody (5483, CST), HRP-conjugated secondary antibodies (7074, CST), anti-PD-L1(BE0101, BioXcell), anti-mouse CD16/32 antibody (553,141, BD Pharmingen), Fixable Viability Stain (565,388, BD Pharmingen), anti-CD80-BV421(562,611, BD Pharmingen), anti-CD86-PE-Cy7(560,582, BD Pharmingen), anti-mouse PD-1-PE (135,206, BioLegend), anti-mouse LAG3-PE-Cy7 (125,226, BioLegend), anti-mouse TIM3-BV421 (119,723, BioLegend), anti-mouse FOXP3-BV421 (126,419, BioLegend), anti-mouse Ki67-PE-CY7 (652,426, BioLegend), anti-mouse PD-L1-PE (124,308, BioLegend), anti-mouse CD11b-FITC (101,206, BioLegend), anti-mouse Ly6G-PE (551,461, BD Pharmingen), anti-mouse Ly6C-PE-Cy7 (128,018, BioLegend), anti-mouse F4/80-BV421 (123,132, BioLegend), anti-mouse CD206-APC (141,708, BioLegend), anti-mouse TNFα-PE (554,419, BD Pharmingen), anti-mouse CD3-BV605 (100,237, BioLegend), anti-mouse CD11C-APC (117,310, BioLegend), anti-mouse MHC-II-BV421 (107,632, BioLegend), anti-mouse NK1.1-PE-Cy7 (552,878, BD Pharmingen), anti-mouse CD80-PE (552,769, BD Pharmingen).
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9

Immune Cell Profiling by Flow Cytometry

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After digestion, the single-cell suspension was generated and filtered through a 40 µm preseparation column, centrifuged at 400×g for 5 mins, and resuspended in PBS. A Zombie Aqua™ Fixable Viability Kit (Biolegend, 423101) was used to identify live cells for 20 min in the dark according to the manufacturer’s instructions. After that, the suspension was centrifuged again at 400×g for 5 mins and resuspended in stain buffer (BD Biosciences, 554657). Purified anti-mouse CD16/32 (Biolegend, 101301) was used to block Fc of the cells on ice for 5 min, and then the cells were stained at 4°C for 30 min with the following antibodies: anti-mouse CD45-APC/750 (Biolegend, 103154), anti-mouse CD11b-FITC (Biolegend, 101206), anti-mouse Ly6G-PE/Cy7 (Biolegend, 127618), anti-mouse F4/80-APC (Biolegend, 123116), anti-mouse Ly6C-PE (Biolegend, 128007), anti-mouse I-A/I-E-BV605 (Biolegend, 107639), anti-mouse CD206-BV421 (Biolegend, 141717), or anti-mouse C-C motif chemokine receptor 2 (CCR2)-BV421 (Biolegend, 150605). Next, stain buffer was added, and the cells were washed twice. Flow cytometry analysis was performed on the second day, and the data were analyzed with FlowJo software.
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10

EMC6 Modulation of Tumor Immunity

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EMC6 was analyzed in relation to tumor immunity in the following areas, including immune activation, chemokines, chemokine receptors, histocompatibility complex (MHC) and various immune cell infiltrations as calculated by CIBERSORT. All gene markers were obtained from previous studies.38 (link),39 ,40 (link) In our study, we used flow cytometry to detect the infiltration of immune cells (CD4+ T cell, CD8+ T cell, and macrophages) in a mouse subcutaneous tumor bearing model. The antibodies used in this flow cytometry are as follows: anti-mouse-CD45-APC (BioLegend, cat:103111); anti-mouse-CD3-PE (BioLegend, cat:100205); anti-mouse-CD4-PerCP-Cy 5-5 (BioLegend, cat: 100433); anti-mouse-CD8-FITC (BioLegend, cat: 100705); anti-mouse-CD45-PE (BioLegend, cat: 103105); anti-mouse-CD11b-FITC (BioLegend, cat: 101205); anti-mouse-F4/80-APC (BioLegend, cat:123115).
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