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46 protocols using dmem f12

1

Genetically Modified Mouse Mesenchymal Stem Cells

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Bone marrow-derived mMSCs of C57BL/6 mice were purchased from Cyagen Biosciences, Inc. These MSCs were isolated from the bone marrow of the femurs of C57BL/6 mice. They were uniformly positive for CD29, CD44, and Sca-1 antigens and negative for CD117 and CD31 antigens, and possessed the potential to differentiate into osteocytes, adipocytes, and chondrocytes, as demonstrated in the instructions provided by the supplier. The transduction of mMSCs using lentiviral vectors has been described in our previous study (14 (link)). Following transduction, mMSCs tagged with green fluorescent protein (GFP), p130 or E2F4 with GFP; namely, normal control mMSCs (MSC-NC), MSCs overexpressing p130 (MSC-p130) or MSCs overexpressing E2F3 (MSC-E2F4), were cultured in Dulbecco's modified Eagle's medium/nutrient mixture F-12 (DMEM/F12; Wisent, Inc.) containing 10% foetal bovine serum (FBS; Wisent, Inc.) and 1% antibiotic-antimycotic solution (streptomycin, penicillin and amphotericin B; Wisent, Inc.). Following incubation at 37˚C in a humidified atmosphere with 5% CO2, cells at passages 6-10 were used for in vitro experiments. MLE-12 cells purchased from Xiangfbio Ltd. were cultured in DMEM/F12 with 2% FBS and 1% antibiotic-antimycotic solution (Wisent, Inc.) in a humidified 5% CO2 incubator at 37˚C.
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2

Isolation of Interscapular Brown Adipose Tissue

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Interscapular BAT stromal vascular fraction (SVF) was obtained from 3-week-old animals (following genotyping). Interscapular BAT was dissected, washed in PBS, minced, and digested for 45 minutes at 37°C in isolation buffer (1.5 mg ml-1 collagenase B (Sigma), 123 mM NaCl, 5 mM KCl, 1.3 mM CaCl2, 5 mM glucose, 100 mM HEPES, and 4 % BSA). The tissue suspension was filtered through a 100 μm cell strainer and centrifuged at 600 g for 5 min to pellet the SVF, which was subsequently resuspended in adipocyte culture medium (DMEM/F12 (Wisent), 10 % FBS and 0.1 % PenStrep), filtered through a 40 μm cell strainer, centrifuged at 600 g for 5 min, resuspended and plated in adipocyte culture medium onto polystyrene cell culture dish (Corning). Cells were maintained at 37°C in 10% CO2. Cells from 5 animals were plated on a single 10 cm dish, passaged twice to ten 10 cm dishes. Cells from each 10 cm dish were frozen and stored in liquid nitrogen in freezing media (10% DMSO, 90% FBS) at 80% confluency.
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3

Isolation of Interscapular Brown Adipose Tissue

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Interscapular BAT stromal vascular fraction (SVF) was obtained from 3-week-old animals (following genotyping). Interscapular BAT was dissected, washed in PBS, minced, and digested for 45 minutes at 37°C in isolation buffer (1.5 mg ml-1 collagenase B (Sigma), 123 mM NaCl, 5 mM KCl, 1.3 mM CaCl2, 5 mM glucose, 100 mM HEPES, and 4 % BSA). The tissue suspension was filtered through a 100 μm cell strainer and centrifuged at 600 g for 5 min to pellet the SVF, which was subsequently resuspended in adipocyte culture medium (DMEM/F12 (Wisent), 10 % FBS and 0.1 % PenStrep), filtered through a 40 μm cell strainer, centrifuged at 600 g for 5 min, resuspended and plated in adipocyte culture medium onto polystyrene cell culture dish (Corning). Cells were maintained at 37°C in 10% CO2. Cells from 5 animals were plated on a single 10 cm dish, passaged twice to ten 10 cm dishes. Cells from each 10 cm dish were frozen and stored in liquid nitrogen in freezing media (10% DMSO, 90% FBS) at 80% confluency.
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4

Cell Culture Conditions Across Cell Lines

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The Human Embryonic Kidney cell line (HEK293T) was grown in DMEM high glucose (Wisent, St-Bruno, Canada) containing 10% FBS, 2 mM L-glutamine and penicillin/streptomycin. The ER+ human breast adenocarcinoma cells, MCF7, were cultured in DMEM/F12 (Wisent Bioproducts, St-Bruno, Quebec, Canada) supplemented with 5% FBS, 2 mM L-glutamine, penicillin/streptomycin, 15 mM HEPES, 0,2% sodium bicarbonate and 10E-9 M estradiol. The human cervical carcinoma cells, HeLa, were grown in DMEM medium (Wisent) with 5% FBS, 2 mM L-glutamine and penicillin/streptomycin. Cells were grown at 37°C in a 5% CO2 incubator.
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5

Mouse Mesenchymal Stem Cell Isolation

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Mouse mesenchymal stem cells and dendritic cells were used in the present study. MSCs derived from the bone marrow of C57BL/6 mice were purchased from Cyagen Biosciences Inc. (Guangzhou, China). The supplier identified MSCs based on the cell surface phenotype and pluripotency. MSCs were cultured in DMEM/F12 containing 10% fetal bovine serum (Wisent, Nanjing, China) and grown in a humidified 5% CO2 sterile incubator at 37 °C.
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6

Detailed Characterization of Human EOC Cell Lines

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The human EOC cell lines [TOV81D, TOV112D, TOV1946, OV866(2), OV1946, TOV2295(R), OV4485] were derived in our laboratory from patients’ tumors (TOV) or ascites (OV) and characterized in detail [34 (link)–38 (link)]. All EOC cell lines were maintained in a low oxygen condition of 7% O2 and 5% CO2 and grown in OSE medium (Wisent, Montreal, QC). The human retinal epithelial cell line ARPE was purchased from American Type Culture Collection (ARPE-19, #CRL2302) and maintained in DMEM-F12 (Wisent). All media were supplemented with 10% FBS (Wisent), 0.5 μg/mL amphotericin B (Wisent), and 50 μg/mL gentamicin (Life Technologies Inc). Antibodies, chemicals, oligonucleotides, plasmids, and commercial assays used in this study are indicated in Supplementary Table S1.
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7

Generation and Characterization of Engineered Cell Lines

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293 Flp-In T-REx cells (Invitrogen), HEK293FT, MDA-MB-231, HS578T, MDA-MB-468 and IMR90 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Wisent). MDA-MB-436 and BT549 were cultured in Roswell Park Memorial Institute medium (RPMI, Wisent), and RPE1 was cultured in Dulbecco's modified Eagle's medium F/12 (DMEM F/12, Wisent). All media were supplemented with 10% fetal bovine serum (FBS, Gibco) and 1% penicillin streptomycin (Invitrogen). All cells were maintained at 37°C, 5% CO2 and atmospheric O2. Lentiviruses were produced by co-transfecting HEK293FT cells with plasmids encoding 3xHA-BCL11A160–520, 3xHA-BCL11A-XL, 3xHA- BCL11AΔ160–520, or short hairpin RNA against BCL11A (Mission shRNA pLKO.1 library from Sigma or GipZ shRNA from Dharmacon) with packaging plasmid psPAX2 and envelop plasmid pMD2G. Dicer-substrate siRNA (DsiRNAs) transfections were carried out with two different sequences and cells were collected for the different assays three days after transfection. For doxycline induced knockdown of BCL11A, the sequence of Dicer1 was cloned into a pTRIPZ plasmid. A list of the different shRNA and DsiRNA sequences can be found in Supplementary Table S4. 293 Flp-In T-REx cells were co-transfected with pOG44 (Flp-recombinase expression vector) and a plasmid containing the coding sequence for FLAG-BirA* fusion protein, eGFP-BirA*-FLAG or eGFP-NLS-BirA*-FLAG.
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8

Ovarian Cancer Cell Line Cultivation

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The human OC cell lines CaOV3 and OVCAR3 were obtained from the American Type Culture Collection (Manassas, VA) and maintained in a humidified 5 % CO2 incubator at 37 °C. Cells were passaged twice weekly. OVCAR3 cells were maintained in RPMI-1640 (Wisent, St-Bruno, QC, Canada) supplemented with 20 % FBS, insulin (10 mg/L), glutamine (2 mM) and antibiotics. CaOV3 cells were cultured in DMEM/F12 (Wisent) supplemented with 10 % FBS, 2 mM glutamine and antibiotics. Acellular ascites fractions were obtained at the time of initial cytoreductive surgery from women with advanced serous ovarian carcinomas. Samples were supplied by the Banque de tissus et de données cliniques et biologiques sur les cancers gynécologiques et du sein de Sherbrooke as part of the Banque de tissus et de données du Réseau de Recherche en Cancer des Fonds de Recherche du Québec en Santé (FRQS) affiliated to the Canadian Tumor Repository Network (CTRNet). HRP-conjugated anti-mouse and rabbit antibodies and anti-FAK antibody were purchased from Cell Signaling Technology (Danvers, MA). Anti-phospho FAK and anti-phospho Pyl2 were from Thermo Fisher (Waltham, MA). Anti-Pyk2 and anti-Tubulin were purchased from Sigma-Aldrich (Oakville, ON). CCL18 and CCL18 neutralizing antibody were from RnD Systems (Minneapolis, MN). Plasmid pCMV6-ENTRY-PTK2B was obtained from Origene (Rockville, MD).
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9

Expansion of Neural Stem Cells

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GliNS1 and Gli489 were cultured and expanded on plates coated with 0.01% poly-L-ornithine (Sigma, Cat # P4957) followed by 1% laminin (Sigma, Cat # L2020) in phosphate buffered saline (PBS) solution.
Briefly, the cells were thawed at room temperature, and combined with 10mL of Dulbecco's Modified Eagle Medium with F12 (DMEM/F12) (Wisent, Cat #219-095-XK) in a 15mL conical tube. By centrifuging at 800rpm for 3mins, the cells were pelleted; the supernatant was aspirated, and the cell pellet was resuspended in 10mL of neural stem cell (NSC) culture media, and plated onto laminin-coated plates. The NSC media was composed of Neurocult NS-A basal medium human (Stem Cell Technologies, Cat #05750) along with L-glutamine (Sigma, Cat #G7513), antibiotic/antimycotic (Sigma, Cat #A5955), bovine serum albumin, epidermal growth factor, basic fibroblast growth factor, B27 supplement, N7 supplement, and heparin. The media was changed every 3-4 days, and the cells were passaged upon reaching ~80% confluence.
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10

Purification and Reconstitution of Membrane Proteins

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POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-(1'-rac-glycerol), POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine) and NBD-PC were from Avanti Polar Lipids (Alabaster, AL, USA); Bio-Beads SM2 Adsorbent, Bio-Spin chromatography columns and Bio-Gel P-6 were from Bio-Rad (Hercules, CA, USA); Micro-Spin columns with screw caps were from Thermo Scientific (Rockford, IL, USA); 100 × protease inhibitor cocktail was from EMD Millipore (Billerica, MA, USA); DDM was from Anatrace (Maumee, OH, USA); anti-FLAG M2 agarose and 3 × FLAG peptide were from Sigma (St Louis, MO, USA); SNAP-capture resin was from New England Biolabs, Ipswich, MA, USA); PfuUltra II DNA polymerase was from Agilent (Santa Clara, CA, USA); QiaFilter Plasmid Maxi kit was from Qiagen (Valencia, CA, USA); DMEM, 100 × penicillin/streptomycin were from Invitrogen (Grand Island, NY, USA); heat-inactivated fetal bovine serum (FBS) was from Atlanta Biologicals (Lawrenceville, GA, USA); DMEM/F12 was from Wisent (Saint Bruno, QC, Canada); FBS and DPBS from Life Technologies (Waltham, MA, USA); doxycycline from Bio Basic (Markham, ON, Canada); blasticidin and puromycin from Bioshop Canada (Burlington, ON, Canada); Jetprime transfection reagent from Polyplus Transfections (Illkirch, France); and Miniprep kit from Qiagen.
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