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56 protocols using flexstation 3 plate reader

1

Measurement of Cellular cAMP Levels

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CHO-APJ cells expressing Nb5 or Nb17 were plated onto a 96-well plate at 80,000 cells/well and incubated at 37 °C overnight in 5% CO2. On the day of the cAMP assay, cells were treated with IBMX at a final concentration of 750 µM for 20 min at room temperature. Cells then were treated with forskolin (20 µM), together with apelin-13 at various concentrations for 10 min. After these reactions, cells were lysed and their intracellular cAMP levels were measured according to the procedures of the CatchPoint Cyclic-AMP Fluorescent Assay Kit (Molecular Devices, Sunnyvale, CA USA). Fluorescence with excitation/emission at 530/590 nm was read with a Flexstation3 plate reader (Molecular Devices).
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2

ATP-Induced Calcium Imaging in Neurons

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On day one, SV40-T immortalized neurons were seeded at 70% confluency in a black flat clear bottom 96-well plate (Corning Inc, Kennebunk, ME). On day 3, neurobasal media was removed from the cells and assay buffer, which consists of physiological salt solution (PSS) buffer (126 mM NaCl, 5 mM KCl, 1.2 mM MgCl2, 10 nM HEPES, 10 nM glucose, 1 nM CaCl2)+0.2 mM sulfinpyrazone+0.1 mM CaCl2+12 µl pluronic F-127 (Life Technologies)+60 µg fluo-4 AM (Life Technologies), was added and incubated for 1 h at 37°C and 10% CO2. Assay buffer was removed and cells were washed once with 1× PBS followed by incubation with PSS buffer+0.2 mM sulfinpyrazone+0.1 mM CaCl2 for 10 min at 37°C and 10% CO2. The 96-well plate was inserted into the Flexstation 3 plate reader (Molecular Devices, Sunnyvale, CA) and the cells were treated with 10 µM, 3 µM, 1 µM, 0.3 µM and 0.1 µM of ATP dissolved in PSS buffer. PSS buffer without ATP was included as a negative control. The Flex mode setting was used with λex=494 nm and λem=516 nm. ATP-dependent Ca2+ response was followed for 120 s over 10 s intervals with six readings per well. The experiment included quadruplicate samples per plate and was repeated two independent times. Dose-dependent curves were fitted and EC50 was calculated.
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3

Quantifying Autotaxin Activity Assay

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ATX activity was measured in conditioned media (CM) of WT and ATX-KO B16-F10 cells or BALF from mice injected with WT or ATX-KO B16-F10 cells, as described in [18 (link)]. Briefly, the fluorogenic LPC analog, FS-3 (Echelon Biosciences, Salt Lake City, UT, USA) was used as a substrate for ATX. For measurement of ATX activity in culture medium, CM was collected after 18 h of incubation in serum-free medium, clarified by centrifugation, filtered through a 0.22-μm filter, and concentrated using an Amicon Ultra 30,000 Centrifugal Filter Unit (Millipore; Billerica, MA, USA). For measurement of the activity in biological fluids, BALF was rapidly stored at −80 °C after collection and thawed on ice just before the assay. Five hundred microliters of BALF was then concentrated to 150 μL using an Amicon Ultra 10,000 Centrifugal Filter Unit (Millipore; Billerica, MA, USA). Activity was measured by incubating 30 μL of cell CM or murine BALF with 2 μM FS-3 substrate and 10 μM BSA (Sigma-Aldrich) in assay buffer consisting of 50 mM Tris, (pH = 8.0), 140 mM NaCl, 5 mM KCl, 1 mM CaCl2, and 1 mM MgCl2. A 10 nM final concentration of purified recombinant human ATX was used as a positive control. Fluorescence was read every 2 min for 4 h at 37 °C at wavelengths of 485 nm and 538 nm using a FlexStation3 plate reader (Molecular Devices, San Jose, CA, USA).
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4

Quantifying Riboflavin in Clinical Perfusate

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Standards were reconstituted in UW-MPS (i.e. 500nM FMN or 500nM Rf), with Rf dissolved initially in acetonitrile to a final volume of ~5%. Clinical perfusate samples included in this analysis were the samples showing the highest (FI)(ex450;em500-600) observed in the previous analysis (n = 13). The full fluorescence emission spectra for these samples were analysed in a FlexStation 3 plate reader (Molecular devices, California, USA) using a bandwidth of 5nm and an excitation wavelength of 440nm (Rf peak excitation is at 442nm, as such an excitation wavelength of 440nm was used in order to measure fluorescence emissions of both compounds). Correction for the blank sample (UW-MPS) was performed, and when below the limit of detection of the assay, included as zero. Standards and clinical perfusate samples were zeroed at 650nm. Data are plotted using a LOWESS smoothing regression curve based on 3 technical replicates (Graph Pad Prism (version 9.0.1)).
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5

Wnts and TGF-β1 Proliferation Assay

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Rat vascular smooth muscle cells (2000/per well in a 96 well plate) were starved in DMEM media supplemented with 0.2% FBS for 24 h. Cells were then stimulated with Wnts recombinant proteins or TGF-β1 in DMEM media with 0.2% FBS. For adenoviral proliferation assays, transductions were carried out as previously described. 96 h after treatment, 50 uL of CellTiter-Glo (Promega, Madison WI) reagent was added to each well. The plate was then analyzed using the Flexstation 3 plate reader (Molecular Devices, Sunnyville CA).
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6

Macrophage Oxidative Stress Assessment

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Macrophages are seeded in 96-well plates (2 × 104 cells/well, black&flat-bottom wells, Coring, USA, catalog number: 3603), wash with HBSS, and stain with Mito-SOX Red (200 μL, 3 μM in HBSS) for 10 min at 37 °C, then remove working solution, wash with HBSS for 2 times. Bis-(1,3-dibutylbarbituric acid) trimethine oxonol (DiBAC4(3), Sigma–Aldrich, USA, catalog number: D8189) was added to each well (100 μL, 5 μM) and place into an incubator (37 °C, 5%CO2) for 15 min. Bone soup samples (50 μL/well) are added at different particle/cell ratios, using HBSS as control. The particle/cell ratios are 3500/1, 700/1, 140/1. 2,2′-azobis (2-amidinopropane) dihydrochloride (AAPH, Sigma–Aldrich, USA, catalog number:440914, 25.6 μM in HBSS) is added (50 μL/well, final concentration 6.4 μM). The fluorometric measurements are conducted on three duplicates by FlexStation 3 Plate Reader (Molecular Devices, Sunnyvale, CA, USA) every 10 min for 120 min at 37 °C for cells stained with Mito-SOX Red and DiBAC4(3), at Ex = 510 nm, Em = 580 nm and Ex = 493 nm, Em = 516 nm, respectively. The fluorescent micrographs are taken right after the fluorometric measurement (Leica, DMI3000 B Inverted Microscope, Ex = 515–560 nm and Em = 590 nm for MitoSOX Red, Ex = 450~490 nm and Em = 516 nm for DiBAC4(3)). The whole process was repeated twice to check the reproducibility.
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7

MTT Cell Viability Assay Protocol

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We used the MTT Cell Growth Assay Kit (Millipore Sigma, CT02) for all of our viability experiments. Cells were seeded in a 96-well plate at 5000 cells/well and treated for the specified time in each figure legend (up to 10 days). We followed the protocol in the company instructions in the kit and analyzed colorimetric results using the FlexStation 3 plate reader (Molecular Devices).
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8

Astroglial Intracellular Calcium Dynamics

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Astroglia were plated in 96-well plates with black walls and a clear base (Costar, Glendale, Arizona, USA) at a concentration of 20,000 cells per well, and were cultured in medium containing 100 µM INI-0602 for 40–60 min at 37 °C. Untreated or INI-0602-treated astroglia were then incubated with 2 mM Fura-2 AM (ab120873; Abcam) in HBSS for 40 to 60 min at 37 °C. Following this manipulation, buffer was extracted using a multi-pipette, and cells were rinsed for 15 to 20 min using HBSS to wash away extracellular dye. Cells were preheated for 10 min before data collection was initiated. Fura-2 fluorescence was assessed at excitation wavelengths of 340 and 380 nm with an emission wavelength of 520 nm, using a Flexstation 3 plate reader (Molecular Devices, San Jose, CA, USA). A sampling interval of 3 s with 60 reads per well was applied. The Fura-2 ratio was computed using Softmax Pro v5.4 (Molecular Devices), and reactions were quantified by calculating the AUC.
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9

Quantitative IP1 Receptor Assay Protocol

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Quantitative measurements of receptor-mediated inositol 1-phosphate (IP1) were performed by competitive immunoassay utilising the IP-One assay kit (CisBio, France). HEK293 cells were prepared as described above and then assayed as per the manufacturer’s protocol. Briefly, at the time of assay, the culture media was removed from cells, and then replaced with IP-One stimulation buffer (HEPES 10 mM, CaCl2 1 mM, MgCl2 0.5 mM, KCl 4.2 mM, NaCl 146 mM, glucose 5.5 mM, LiCl 50 mM, pH 7.4). Cells were allowed to equilibrate in the stimulation buffer at 37 °C for 15 min, followed by addition of peptide ligands (to final concentrations of 0.1 pM – 10 µM) for subsequent stimulation for 1 h at 37 °C. The stimulation was terminated by lysis and the simultaneous addition of homogenous time-resolved fluorescence resonance energy transfer reagents. The lysates were incubated for a minimum of 1 h at room temperature. Fluorescence emission measurements at 620 nm and 665 nm were performed using a FlexStation3 plate reader (Molecular Devices, Sunnyvale, CA) or Spark Multimode plate reader (Tecan, Männedorf, Switzerland) at an excitation wavelength of 340 nm. Results were analysed as a ratio of fluorescence intensities of 665 nm to 620 nm.
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10

ORAC Assay for Antioxidant Activities

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The antioxidant activities of P1 and P2 were measured by ORAC assay35 (link). The fluorescence intensity was recorded every 2 for 120 min at Ex485 nm and Em520 nm, respectively (FlexStation 3 Plate Reader, Molecular Devices, USA). The data were expressed as TE/g of samples according to the equation as below: ORACvalue=TroloxEquivalent/DryweightofsampleTEmmol/g
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