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8 protocols using polyvinylidene difluoride nitrocellulose membranes

1

Western Blot Analysis of Protein Expression

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Following treatment of A549 and H1299 cells with B. nigra extract and/or CPT at the desired concentrations for 24 h, total proteins were extracted after washing with phosphate-buffered saline (PBS). The cells were lysed in ice-cold cytoskeletal lysis buffer supplemented with freshly prepared phosphatase and protease inhibitors (Roche, Mannheim, Germany). After total protein normalization, samples (50 μg protein) were loaded onto 4x sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels and separated electrophoretically, and the denatured proteins were transferred to polyvinylidene difluoride nitrocellulose membranes (Millipore, Darmstadt, Germany). At room temperature, the membranes were blocked in 5% dried non-fat milk for 2 h. After blocking, the membranes were incubated with primary antibodies overnight at 4 °C and followed by incubation with HRP-conjugated secondary antibodies [goat anti-rabbit IgG, 1:1000 or anti-mouse IgG, 1:1000] for 2 h at room temperature. The membrane blots were developed using chemiluminescence detection solution. GAPDH and β-actin were used as housekeeping controls.
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2

Protein Extraction and Western Blot Analysis

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Cells and tumor tissue were lysed with radioimmunoprecipitation (RIPA) buffer (50 mmol/l Tris–HCl (pH 7.4), 150 mmol/l NaCl, 5 mmol/l EDTA, 1% Triton X-100, 1% sodium deoxycholic acid and 0.1% SDS) plus with 2 mmol/l phenylmethylsulfonyl fluoride (PMSF), 50 mmol/l NaF, 1 mmol/l Na3VO4, and protease or phosphatase inhibitor cocktail (Sigma-Aldrich, Inc.). Soluble protein lysate concentrations were determined by the BCA protein assay kit (Pierce, Rockford, IL, USA). Equal amounts of total or nuclear protein (20–120 μg) were resolved on 8–12% SDS-PAGE and transferred onto polyvinylidene difluoride nitrocellulose membranes (Millipore, Billerica, MA, USA). Membranes were incubated in 5 % (w/v) bovine serum albumin (BSA/TBST) and incubated overnight at 4 °C on a shaker with specific primary antibodies. Membranes were washed with TBST and then incubated with secondary antibody (Sigma-Aldrich, Inc.) for 1 h at room temperature. After washing three times, the signal bands were visualized via chemiluminescence western blot detection reagent (ECL kit) and auto-radiographic film.
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3

Protein Extraction and Western Blot Analysis

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Cells were lysed with radioimmuno-precipitation (RIPA) buffer [(50 mmol/L Tris–HCl (pH 7.4), 150 mmol/L NaCl, 5 mmol/L EDTA, 1% Triton X-100, 1% sodium deoxycholic acid, 0.1% SDS, 2 mmol/L phenylmethylsulfonyl fluoride (PMSF), 30 mmol/L Na2HPO4, 50 mmol/L NaF, 1 mmol/L Na3VO4, and protease or phosphatase inhibitor cocktail (Sigma-Aldrich, Inc. Shanghai, China)]. For xenografts, tumor issues well minced, and lysed with RIPA buffer. Samples were resolved on 8–12% SDS-PAGE and transferred onto polyvinylidene difluoride nitrocellulose membranes (Millipore, Billerica, MA). Membranes were incubated in 5% (w/v) bovine serum albumin (TBST/BSA) and stored overnight at 4°C on a shaker with specific primary antibodies (1/1,000 in TBST/BSA). Membranes were washed with TBST and incubated for 1 h with secondary antibody (1/10,000 in TBST/BSA) at room temperature. After several washes, the signals were visualized via the Odyssey western blot detection system.
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4

Protein Extraction and Western Blot Analysis

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Frozen brain tissues were lysed in RIPA buffer (50 mM Tris-Cl, pH 7.5, 150 mM, NaCl, 1% NP-40, 0.5% DOC, and 0.1% SDS) containing a complete protease inhibitor cocktail and phosphatase inhibitor cocktail (Roche, Basel, Switzerland). Homogenate tissue was incubated at –20°C overnight and centrifuged at 15,000 rpm for 30 min. Equal amounts of protein were separated on 8 or 12% SDS polyacrylamide gels and transferred onto polyvinylidene difluoride-nitrocellulose membranes (Millipore). Membranes were incubated overnight at 4°C with suitable primary antibodies followed by the corresponding HRP-conjugated secondary antibodies for 1 h. The target bands were detected using an enhanced chemiluminescence detection kit (Millipore). Data are representative of at least three to four independent experiments and quantified by densitometric analysis.
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5

Ileum, eWAT, and Liver Protein Analysis

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On the basis of previously established protocol of Rong et al,36 proteins were extracted from ileum, eWAT, and liver by using lysing buffer (Solarbio). Roughly 30 μg protein was separated by electrophoresis (12 % and 5 % sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels) and then transferred onto polyvinylidene difluoride nitrocellulose membranes (Millipore, Burlington, MA), which were further blocked by 5 % non-fat milk in Tris-Tween buffered saline buffer for 2 hours. After blocking, these membranes were incubated with various primary antibodies, including anti-Niemann-Pick C1-Like 1 (NPC1L1), anti-lysophosphatidylcholine acyltransferase 3 (LPCAT3), anti-fatty acid transport protein4 (FATP4), anti-LPL, anti-adipose triglyceride lipase (ATGL), anti-acetyl CoA-carboxylase (ACC), anti-IL-22, anti-STAT3, anti-phosphorylated STAT3 (p-STAT3), anti-ANGPTL4, and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Abcam, Cambridge, UK), and horseradish peroxidase-conjugated secondary antibody. Finally, proteins were imaged using chemiluminescent peroxidase substrate (Millipore) and quantified using ChemiDoc XRS system (Bio-Rad, Richmond, CA).
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6

Protein Expression Analysis by Western Blot

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Cells were washed with ice-cold PBS, harvested, and lysed in radioimmunoprecipitation assay (RIPA) buffer (150 mM NaCl, 1% NP-40, 0.5% deoxycholic acid, 0.1% SDS, 50 mM Tris–Cl; pH 7.5) with complete protease and phosphatase inhibitor cocktails for 30 min at –20 °C. Cell lysates were centrifuged at 15,000 rpm for 30 min at 4 °C. Equal amounts of protein were separated by 8–12% SDS polyacrylamide gels and transferred onto polyvinylidene difluoride-nitrocellulose membranes (Millipore). The membranes were blocked with 5% skim milk in TBST and were incubated at 4 °C overnight with specific primary antibodies and then with HRP-conjugated horseradish peroxide-conjugated secondary antibody. Specific bands were detected by enhanced chemiluminescence (ECL; Millipore, Billerica, MA, USA) and analyzed by a luminescent image analyzer LAS-4000 (Fujifilm, Tokyo, Japan). The relative intensities of each band were measured using Image J software.
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7

Western Blot Analysis of Lung Proteins

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Total proteins were extracted from the lung tissues and HPAECs with RIPA Lysis and Extraction buffer (Thermo Scientific, Rockford) containing protease inhibitors, phosphatase inhibitors, and PMSF. The protein concentrations were measured using BCA protein assay kit (Beyotime, Jiangsu, China). An equal amount of protein from each sample was subjected to electrophoresis on 10% SDS-PAGE gels and transferred to nitrocellulose/polyvinylidene difluoride membranes (Millipore, Bedford, MA) in a Bio-Rad Trans-Blot system. The membranes were blocked in TBST containing 5% powdered non-fat dry milk for 1 h at room temperature and then probed with primary antibodies, followed by incubation with the corresponding secondary antibodies. Antibodies against VE-cadherin, α-SMA, vimentin, fibronectin, p-SMAD1/5/SMAD1/5 and BMPR2 were obtained from Abcam (Cambridge, MA). β-actin, snail, twist antibody was obtained from Proteintech (Proteintech Group, CHI, USA). Protein signal was visualized by a WesternBright ECL (Advansta, CA). The band intensity was measured by Quantity One software (Bio-Rad, USA).
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8

Hippocampal Protein Extraction for Western Blotting

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DG tissue was isolated from the hippocampal formation and the total protein was extracted using a standard assay for western blotting [32 (link)]. Lysed protein samples were resolved on 8-15 % precast SDS-polyacrylamide gels under electrophoresis (BioRad, Richmond, CA), transferred to nitrocellulose/polyvinylidene difluoride membranes (Millipore, Bedford, MA), then subjected to immunoblotting using primary antibodies against rabbit anti-tropomyosin receptor kinase B (TrkB) (1:500; Santa Cruz; sc-20542), mouse anti-brain-derived neurotrophic factor (BDNF) (1:200; LSBio; LS-C196746), and mouse anti-synaptophysin (SYP) (1:1,000; SYSY; Cat. No. 102011). An antibody against β-actin (1:2,000; Abcam) was used to control for protein loading. Protein bands were visualized by enhanced chemiluminescence with an ECL Plus chemiluminescence detection kit (Amersham). Densitometric analysis of the bands was performed using a Quantity One system (version 4.6, Bio-Rad).
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