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6 protocols using percoll gradient

1

Semen Analysis of COVID-19 Recovering Patients

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The clinical and demographic information was recorded at the participant’s hospital visit. For patients, their semen examinations were performed at the first visit during the recovered period, and the recovered time for the seven patients was all ≤ 100 days. The serum Follicle−stimulating hormone (FSH), luteinizing hormone (LH), total T, and estradiol (E2) concentrations were measured using a chemiluminescence immunoassay (Beckman Coulter, Fullerton, USA). Following the three to seven days of advised abstinence, freshly obtained semen was processed for 30 to 60 minutes at room temperature to liquefy it. Sperm examination was performed in strict accordance with the WHO laboratory manual (25 ). Purified sperm samples were obtained by centrifuging them for 20 minutes at 1000 g while using a Percoll gradient (Solarbio, Beijing, China). After washing them with PBS twice, the purified sperm samples were used for subsequent experiments.
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2

Cerebrum Lipid Peroxidation Quantification

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The mouse cerebrum was removed and incubated for 30 min at 37°C in 10 ml of PBS containing 100 U/ml collagenase IV (Solarbio, C8160) and 20 U/ml DNase I (Solarbio, D8071) after anesthetization and intracardial perfusion. Brain tissue was passed through a tissue grinder and cells were recovered after centrifugation at 400 g for 10 min at room temperature and separated from myelin and debris in 70% and 30% isotonic Percoll gradient (Solarbio, P8370). Samples were centrifuged at 1000 g for 30 min without acceleration or brake. Cells were collected from the interface and washed once with PBS.20 After sample preparing, lipid peroxidation (LPO) of the cerebrum was detected by BODIPY™ 581/591 C11 (Invitrogen, D3861) according to the manufacture's instruction. Cells were incubated at 4℃ for 30 min with the LPO sensor and washed with PBS for three times at 1000 g for 5 min. Data acquisition was carried out in a BD FacsCantoII cytometer (BD Biosciences) using the FacsDiva software (BD Biosciences) and detected at two separate wavelengths (PE for the reduced dye; FITC for the oxidized dye). The ratio of FITC/PE gives the read‐out for LPO in cells.
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3

Isolation and Culture of Granule Cell Progenitors

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Cerebella from P7 animals were minced into small pieces using scissors and were digested at 37 °C for 30 min in 2 mg/ml papain (Solarbio) and 10 μg/ml DNase (Sigma). Single-cell suspension was obtained via trituration with glass pipettes and then centrifuged through a 35%–65% Percoll gradient (Solarbio). GCPs were harvested from the 35%–65% interface and centrifuged at 2000 rpm for 5 min at room temperature. Cells in high glucose DMEM medium (HyClone) were washed and suspended in the GCP culture medium, which is composed of Neurobasal A medium (Invitrogen) with 2 mM L-glutamine, 2% B27 supplement, and penicillin/streptomycin. GCPs were plated on poly-D-lysine (100 μg/ml)-coated dishes. Cultures were maintained in 5% CO2 at 37 °C and analyzed 24 h after incubation. For vitro proliferation assays, GCP cells were treated with 1 μM Shh inhibitor Vismodegib (GDC-0449, Selleckchem) in DMSO or DMSO alone as control for 48 h, and then 10 μM BrdU for 2 h. For immunostaining analysis, GCPs in culture were immunostained with antibodies against BrdU and NeuN. The relative rate of BrdU+ cells among NeuN+ cells were quantified to examine GCP proliferation in vitro.
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4

Isolation of Colonic Lymphocytes

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Colons were removed from the control, DSS-administered or LFS-01 treated mice followed by incubating in a 37°C water bath in cell dissociation solution made with HBSS, 5 mM and HEPES (Solarbio) so that the epithelial cells of mouse colon were stripped. Supernatant was discarded and colonic tissue was then incubated in a digestion cocktail containing HBSS, 10% FCS (Gibco), 1 mg/ml collagenase type IV, 0.5 mg/ml DNaseI, and 0.5 mg/ml dispase (all from Sigma–Aldrich) in a 37°C water bath. The digested tissue was processed through a 70 mm (Falcon) filter and washed before lymphocytes were separated using a percoll gradient (Solarbio, 40–80%) and re-suspended in complete RPMI (Hyclone) supplemented with 10% FCS (Gibco), 1% HEPES, 50 Mm 2-mercaptoethanol (Gibco), 1% sodium pyruvate, and penicillin and streptomycin (Gibco). Cells were centrifuged at 12000 r.p.m. for 10 min at 4°C, washed three times with D-Hank’s solution and stored on ice.
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5

Isolation of Kupffer Cells from Mouse Liver

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Briefly, an etherized mouse was first perfused with calcium-free Hanks’ balanced salt solution, followed by collagenase digestion. After digestion, the hepatocytes were released by mechanical dissociation of the lobes and underwent several steps of filtration with calcium containing Hanks’ balanced salt solution and centrifugation at 50 g for 5 minutes. The supernatant containing nonparenchymal cells was loaded on a Percoll gradient (25% and 50%; Solarbio, Beijing, China) and centrifuged for 30 minutes at 2000 g at 4°C. The interphase ring with enriched KCs was collected. The cells were then washed twice before RNA and protein extraction for subsequent analyses.
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6

Tumor Dissociation and Lymphocyte Isolation

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On day 14 after tumor inoculation, tumors were harvested, minced, dissociated with a tumor dissociation kit (MACS), and filtered through a 40 μm strainer to obtain single-cell suspensions. Red blood cells were lysed with RBC lysis buffer (Sigma-Aldrich). Tumor-infiltrated lymphocytes were isolated by Percoll gradient following the manufacturer’s protocol (Solarbio).
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