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9 protocols using anti gfp a6455

1

Ovary Immunofluorescence Imaging Protocol

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For experiments without EdU, ovaries were dissected directly into a fixation solution of 4% paraformaldehyde in PBS for 10 min at room temperature, rinsed 3x in PBS, and blocked in 10% normal goat serum (NGS) (Jackson ImmunoResearch Laboratories) in PBS with 0.1% Triton and 0.05% Tween-20 (PBST) for 1 h. Monoclonal antibodies for Fas3 were obtained from the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242. 7G10 anti-Fasciclin III was deposited to the DSHB by Goodman, C. and was used at 1:250 in PBST. Other primary antibodies used were anti-GFP (A6455, Molecular Probes) at 1:1000 in PBST. Ovaries were incubated in primary antibodies overnight, rinsed three times in PBST, and incubated 1–2 h in secondary antibodies Alexa-488 and Alexa-647 (ThermoFisher) at 1:1000 in PBST to label GFP and Fas3, respectively. DAPI-Fluoromount-G (Southern Biotech) was used to mount ovaries.
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2

Activation of T Cell Signaling

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PMA and ionomycin were purchased from Sigma-Aldrich. TNFα was from CellGenix (Freiburg, Germany). PE-conjugated anti-mouse H2Kk (CL9005PE) was from Cedarlane (Ontario, Canada). Anti-GFP (A6455) was from Molecular Probes (Eugene, USA). Mouse anti-human CD3 (555336), -CD28 (555725), and -PKCθ (610089) were from BD Biosciences (San Jose, USA). Anti-CKIP-1 (D-20, sc-50225), -IKKα/β (H470, sc-7607), and -Lck (3A5, sc-433) were from Santa Cruz Biotechnology (Santa Cruz, USA). Anti-β-actin (AC-15, A5441), -c-Myc (9E10, M5546, and C3956), and -FLAG (M2, F3165) were from Sigma-Aldrich. Anti-HA (12CA5) was from Roche (Mannheim, Germany). Anti-p-Erk (Thr202/Tyr204, E10, #9106), -Erk (#9102), and -CARMA1 (1D12, #4435) were from Cell Signaling Technology (Danvers, USA).
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3

Immunohistochemistry of Drosophila Ovaries

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For experiments without EdU, ovaries were dissected directly into a fixation solution of 4% paraformaldehyde in PBS for 10 min at room temperature, rinsed 3x in PBS, and blocked in 10% normal goat serum (NGS) (Jackson ImmunoResearch Laboratories) in PBS with 0.1% Triton and 0.05% Tween-20 (PBST) for 1 hr. Monoclonal antibodies for Fas3 were obtained from the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242. 7G10 anti-Fasciclin III was deposited to the DSHB by Goodman, C. and was used at 1:250 in PBST. Other primary antibodies used were anti-GFP (A6455, Molecular Probes) at 1:1000 in PBST. Ovaries were incubated in primary antibodies overnight, rinsed three times in PBST, and incubated 1–2 hr in secondary antibodies Alexa-488 and Alexa-647 (ThermoFisher) at 1:1000 in PBST to label GFP and Fas3, respectively. DAPI-Fluoromount-G (Southern Biotech) was used to mount ovaries.
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4

Antibody Characterization for Immunoblotting

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The monoclonal anti-SNX6 antibody 446A was used for immunoblotting studies [37] (link). Other primary antibodies were acquired from the following providers: anti-GST (sc-138), anti-lamin A/C (sc-6215), anti-ERK2 (sc-1647), anti-tubulin (sc-8035), anti-UCP2 (sc-6526), anti-lamin A (sc-20680) anti-SP1 (sc-59-G), and anti-GRP94 (sc-11402) from Santa Cruz Biotechnologies; anti-HA (H-9658) and anti-Flag (F-3165) from Sigma; anti-early endosome antigen 1 (EEA1) (ab14453) from Abcam; anti-GFP (A6455) from Invitrogen; and anti-p27 (610242) from BD Transduction Laboratories. Isotype-specific HRP-coupled secondary antibodies were from Santa Cruz Biotechnology.
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5

Fluorescence Imaging of GFP-Expressing Cells

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For fluorescence staining of GFP, infected cells were grown on glass coverslips (12 mm, Thermo Scientific) and GFP production and bacterial lysis was induced as mentioned before. Cell samples were taken 15 h after lysis induction and rinsed twice with PBS, fixed in 3.7% paraformaldehyde for 10 min at room temperature and permeabilised in 0.1% Triton X-100 for 10 min. Thereafter, cells were washed twice with PBS and incubated for 90 min with 1:250 anti-GFP (A6455- invitrogen) at 37 °C. Cells were incubated for 90 min with the ALEXA FLUOR 488 goat anti-rabbit (A11008- life technologies) secondary antibody at 37 °C. Subsequently, cells were washed twice with PBS and incubated for 15 min with PBS containing Hoechst 33258 (1 μg/ml) at room temperature in the dark. After washing with PBS the coverslips were mounted on slides and visualised with a confocal microscope Leica SPE (630X) (Leica Microsystems GmbH, Wetzlar, Germany).
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6

Antibody Reagents for Cell Biology

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Y-27632 and 4’,6-diamidino-2-phenylindol (DAPI) were purchased from Wako Pure Chemical Industries (Osaka, Japan) and Polysciences (Warrington, PA), respectively. Matrigel (growth factor-reduced) was purchased from Corning Incorporated (Corning, NY). Rabbit polyclonal antibodies against human Solo were prepared as previously described [14 (link)]. Other antibodies were purchased as follows: anti-FLAG (M2; Sigma-Aldrich, St. Louis, MO), anti-GFP (A6455; Life Technologies, Camarillo, CA), anti-β-actin (AC-15; Sigma-Aldrich), anti-K18 (DA-7; BioLegend, San Diego, CA), anti-GM130 (CSB-PA600856ESR1HU; Flarebio Biotech LLC, College Park, MD), anti-β4 (58XB4; BioLegend) for immunofluorescence, and anti-β4 (Clone 7; BD Biosciences, Franklin Lakes, NJ) for immunoblotting. Secondary antibodies, anti-mouse IgG-Alexa 488, anti-mouse IgG-Alexa 568, anti-rabbit IgG-Alexa 568, and anti-rat IgG-FITC, were purchased from Thermo Fisher Scientific (Waltham, MA).
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7

Antibodies for Western Blotting and Immunostaining

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Primary antibodies used for Western blotting and immunofluorescent staining were as follows: anti-GFP (A6455; Life Technologies, Carlsbad, CA), anti-myc (2278; Cell Signaling Technology), anti-active Rac1 (26903, New East Biosciences), anti-Rac1 (ARC03, Cytoskeleton). JFC1 antibody was raised by inoculating rabbits with the N-terminal peptide (17 (link)). The following secondary antibodies were used: Alexa fluor (488)-conjugated Goat anti-mouse IgM secondary antibody (Life Technologies), Alexa fluor (647)- conjugated donkey anti- rabbit IgG (Life Technologies), Alexa fluor (647) Goat anti-mouse IgM (Abcam) and Goat anti-rabbit IgG Atto 488 (Rockland). Alexa fluor 488- Phalloidin (A12379) and Rhodamine- Phalloidin (R415) were from Thermo Fischer Scientific.
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8

Assay for Cytoskeleton and Signaling

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FLAG peptide was purchased from Sigma-Aldrich (St. Louis, MO), recombinant K8 and K18 proteins were purchased from Progen (Darra, Australia), rhodamine-labeled phalloidin was purchased from Wako Pure Chemical Industries (Osaka, Japan), Alexa Fluor 568–labeled phalloidin was purchased from Life Technologies (Grand Island, NY), LPA was purchased from Cayman Chemical (Ann Arbor, MI), and Cytopainter MitoRed Indicator was purchased from Abcam (Cambridge, United Kingdom). Rabbit polyclonal antibodies against human Solo, which also recognized dog Solo, were prepared as previously described (Abiko et al., 2015 (link)). Other antibodies were purchased as follows: anti-K18 (DA-7; BioLegend, San Diego, CA) for HeLa cells, anti-K18 (Ks 18.04; Progen, Heidelberg, Deutschland) for MDCK cells, anti-FLAG (M2; Sigma-Aldrich), anti-GFP (A-6455; Life Technologies, Camarillo, CA), anti–β-actin (AC-15; Sigma-Aldrich), anti–β-catenin (Clone 14; BD Biosciences, Franklin Lakes, NJ), anti-plakoglobin (Clone 15; BD Biosciences), and anti-RhoA (sc-418; Santa Cruz Biotechnology, Dallas, TX).
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9

Western Blot Antibody Dilutions

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All antibodies were diluted in 1× Tris buffer saline Tween 20 (TBST; 20.0 mm Tris–HCl pH 7.6, 137 mm NaCl, 0.1% Tween 20 (v/v) containing 5% bovine serum album). Anti‐GFP (A6455, Life Technologies), anti‐phosphop38 antibodies (New England Biolabs), and anti‐β‐tubulin (E7, Developmental Studies Hybridoma Bank University of Iowa) antibodies were used at 1:1,000 dilutions. Horseradish peroxidase (HRP)‐conjugated secondary anti‐mouse IgG and anti‐rabbit IgG antibodies were used at 1:2,000.
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