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12 protocols using human fgf10

1

Generation and Culture of FT Organoids

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Generation and culture of FT organoids was performed as described in Kessler et al13 (link). In brief, epithelial progenitors from human FT tissue samples were isolated by enzymatic digestion with collagenase I (Sigma). The retrieved primary cells were seeded in 2D culture for 5–7 days (ADF medium with 12 mM HEPES, 1% GlutaMAXTM, 10 ng ml−1 human EGF and 9 µM Y-27632) before seeding in MatrigelTM (~30,000 cells/50 µl) for 3D organoid formation. Once the MatrigelTM had set, cultures were overlaid with medium containing a specific growth factor cocktail to preserve stemness and support differentiation (ADF, 25% conditioned mouse Wnt3A-medium as described in Willert et al.39 (link) and 25% conditioned mouse RSPO1 medium40 (link), supplemented with 12 mM HEPES, 1% GlutaMAXTM, 2% B27, 1% N2, 10 ng ml−1 human EGF (all from Invitrogen), 100  ng ml−1 human noggin, 100 ng ml−1 human FGF-10 (both from Peprotech), 1 mM nicotinamide, 9 µM ROCK inhibitor (Y-27632, both from Sigma) and 0.5 µM TGF-β RI Kinase Inhibitor IV (SB431542, Calbiochem)). For propagation, organoids were split every 2 to 3 weeks at a ratio of 1:2 to 1:3 using mechanical splitting with a syringe and needle (26 G gauge). Organoids were kept in a humidified incubator at 5% CO2 and 37 °C, or 35 °C once infected.
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2

Protein and Inhibitor Use in Cell Signaling

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The following recombinant proteins and chemical inhibitors were used: Human FGF7 (100‐19, PeproTech Inc., Rocky Hill, NJ or R&D Systems, Minneapolis, MN), human FGF10 (100‐26, PeproTech Inc.), human FGF2 (100‐18, PeproTech Inc.), human IFN‐α (300‐02AA, PeproTech Inc), FGFR1/2/3 inhibitors AZD4547 (S2801, Selleckchem, Houston, TX) and BGJ398 (NVP‐BGJ398; S2183, Selleckchem), PI3K inhibitor LY294002 (InvivoGen, San Diego, CA), AKT1/2 inhibitor A6730 (A6730, Sigma, Munich, Germany), Mek1/2 inhibitor U0126 (662005, Calbiochem, San Diego, CA), PLC‐γ inhibitor U73122 (1278, Tocris, Bristol, UK), and proteasome inhibitors MG132 (S2619 Selleckchem), bortezomib (PS‐341) (S1013, Selleckchem), and epoxomicin (E3652, Sigma).
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3

Establishment of Airway Organoids

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Organoids were established as described previously (15 (link)). In brief, cells were counted under a microscope and centrifuged at 500 × g for 5 minutes. Then, cells were resuspended in ice-cold 500 μL Matrigel (Corning) and 20 μL drops of Matrigel cell suspension were seeded on prewarmed 48-well culture plates (Corning) at a density of ∼2 × 103 cells per 20 μL Matrigel/well. The Matrigel was solidified for 15 minutes at 37°C and overlaid with 250 μL airway organoid medium [AO; AdDF+++, 20% conditioned R-spondin1 medium supplemented with B27 (Invitrogen), 1.25 mmol/L N-acetylcystein (Sigma-Aldrich), 5 mmol/L nicotinamide (Sigma), 25 ng/mL human fibroblast growth factor 7 (Peprotech), 100 ng/mL human noggin (Peprotech), 100 ng/mL human FGF 10 (Peprotech), 500 nmol/L A83–01 (Tocris), and 500 nmol/L SB202190 (Sigma)]. AdDF+++ medium is advanced DMEM/F12 medium (Invitrogen) supplemented with 10 nmol/L HEPES (Invitrogen), 1× GlutaMax (Invitrogen), and 1× antibiotic–antimycotic (Invitrogen). Y-27632 (10 μmol/L; Enzo Life Science) was added for the first 2 days. Cultures were kept at 37°C, 5% CO2 in a humidified incubator. Medium was replenished every 2 to 3 days.
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4

Oral Tumor Organoid Culture Protocol

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Fresh tumor samples were collected from the Department of Oral and Maxillofacial Surgery, Guanghua School of Stomatology, Sun Yat-sen University. In brief, the samples were digested using Collagenase Type IV (Stemcell, 07909) for 50 min and then filtered through a 100-µm sieve (Falcon, 352360) to remove incompletely digested material. The cell suspension was embedded into the ground substance mixed with DMEM/F12 and Matrigel matrix at a proportion of 1:1. The mixture was seeded into a 24-well plate and cultured in self-configured medium containing DMEM/F12, 1 × B27 supplement, 1 μmol/L prostaglandin E2 (MCE, HY-101952), 10 mmol/L nicotinamide (Sigma, N0636), 1.25 mmol/L N-acetyl-l-cysteine (Sigma, A7250), 50 ng/ml human EFG, 500 nmol/L A83-01 (PeproTech, 9094360), 5 ng/ml human FGF2, 10 ng/ml human FGF 10 (PeproTech, 100-26-5), 0.3 μmol/L CHIR 99021 (Sigma, SML1046), 1 μmol/L forskolin (Abcam, ab120058), 50 ng/ml R-spondin (R&D Systems, 3266-RS), 10 μmol/L Rho-associated kinase (ROCK) inhibitor Y-27632 (TargetMol, T1725), and 25 ng/ml Noggin (PeproTech, 120-10C). The diameter of the organoids was measured after approximately 10 days.
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5

Airway Organoid Cultivation and Passaging

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Organoids were grown in airway organoid medium, previously described (Sachs et al, 2019 (link)), which consists of AdDF+++ supplemented with 1× B27 supplement (Life Technologies; 17504‐044), 1.25 mM N‐acetyl‐l‐cysteine (Sigma‐Aldrich; A9165), 10 mM nicotinamide (Sigma‐Aldrich; N0636), 500 nM A83‐01 (Tocris; 2939), 5 µM Y‐27632 (Abmole; Y‐27632), 1 µM SB202190 (Sigma‐Aldrich; S7067), 100 ng/ml human FGF10 (PeproTech; 100‐26), 25 ng/ml FGF7 (PeproTech; 100‐19), 1% (vol/vol) RSPO3, and Noggin (produced via the r‐PEX protein expression platform at U‐Protein Express BV). This medium was termed airway medium (AO). For passaging, organoids were collected, washed with DMEM (Life Technologies; 10566016) supplemented with penicillin (10,000 IU/ml) and streptomycin (10,000 IU/ml) (DMEM+P/S) and disrupted either by mechanical shearing or by digestion with TrypLE Express (Life Technologies; 12605‐010). After passaging, organoid fragments were replated in fresh BME. During expansion, medium was replaced twice a week.
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6

Cardiac Lineage Differentiation from Cardiac Progenitor Cells

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For cell aggregation, 2.75 × 106 cCICs were plated in 5 mL EB medium (KnockOut DMEM [Gibco 10829‐018] supplemented with 15% KnockOut Serum Replacement [Gibco 10828‐028], 0.1 mM MEM Non‐Essential Amino Acids Solution [Gibco 11140‐050], 1X GlutaMAX‐I [Gibco 35050‐079]) in low‐attachment petri dish for 4 days at 37°C, 5% CO2. For mesoderm induction, cCIC‐spheres were transferred to AF‐coated tissue culture dish in EB medium supplemented with 10% ES‐FBS to allow attachment overnight, followed by mesodermal induction media ([Gibco, 31980030] and Ham's F12 [HyClone, SH30026.01] supplemented with 5 ng/mL Activin A [Peprotech, 120‐14E], 0.5 ng/mL BMP4 [Peprotech, 120‐05ET], 5 ng/mL human vascular endothelial growth factor—VEGF [Peprotech, 100‐20], and 1X Pen/Strep [Gibco, 15140163]) for 24 hours, cardiac induction media (StemPro‐34 SFM medium [Gibco, 10639011] supplemented with 2 mM l‐glutamine [Gibco, 25030081], 0.5 mM Ascorbic acid [Sigma‐Aldrich, A4403‐100MG], 5 ng/mL human VEGF, 10 ng/mL human basic FGF, and 50 ng/mL human FGF10 [Peprotech, 100‐26]) for 7 days. Subsequently, cells were washed twice in cold PBS and fixed in 1% paraformaldehyde (PFA) for immunocytochemistry. For protein lysates, cell pellets were collected before mesodermal induction and at the end of cardiac induction.
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7

Lung Organoid Culture and Analysis

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The unsorted or sorted lung epithelial cells were resuspended in Matrigel and plated into a Matrigel-coated 24-well plate in domes (1–2 × 104 cells in 50 μl Matrigel/well). The plate was incubated at 37°C for 30–45 min before adding 1 ml of medium per well. The cells were incubated in a humidified atmosphere of a cell culture incubator (37°C, 5% CO2). The medium was changed every 3 days. The media used were the following: Lungosphere medium [1 × B-27 without vitamin A, 100 U/ml penicillin, 100 μg/ml streptomycin, in phenol red-free DMEM/F12], supplemented with EGF (20 ng/ml) and/or FGFs [1 or 2 nM FGF2-STAB, FGF2-wt, murine FGF7 (#450-60, Peprotech), murine FGF9 (#450-30, Peprotech), or human FGF10 (#100-26, Peprotech)] as needed according to experiment, and 10 μM Y-27632 (only for the first 3 days of culture); a WNT lung organoid medium (Lee et al., 2017 (link)): 50 ng/ml murine WNT3A (#315-20, Peprotech) or 50% WNT3A-conditioned medium,100 ng/ml murine Noggin (#250-38, Peprotech), 500 ng/ml human R-spondin 1 (#120-44, Peprotech), and 40 ng/ml EGF in lungosphere medium, with or without 40 ng/ml FGF10. Organoid forming efficiency (OFE,%) was calculated as (number of organoids formed)/(number of cells seeded) × 100. Organoid size was measured from organoid photographs using ImageJ (NIH) as the area occupied by the organoid.
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8

HNSCC Organoid Culture Protocol

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HNSCC organoids were cultured as described previously (Driehuis et al., 2019 (link)). In brief, SCC cells isolated from primary HNSCC were suspended with BioCoat MATRIGEL MATRIX (BioCoat, Cat#354253) mixed with organoid medium (1:1). The miscible liquid was plated on the 24-well culture plates and concreted in incubator at 37°C for 30 minutes, and then organoids were cultured in the self-configured medium as described before (Driehuis et al., 2019 (link)). The medium contained DMEM/F12, 1 × B27 supplement (Thermo Fisher, Cat#12587010), 1.25 mmol/L N-acetyl-l-cysteine (Sigma-Aldrich, Cat#A7250), 10 mmol/L Nicotinamide (Sigma-Aldrich, Cat#N0636), 50 ng/mL human EGF (PeproTech, Cat#AF-100-15), 500 nmol/L A83-01(PeproTech, Cat#9094360), 10 ng/mL human FGF10 (PeproTech, Cat#100-26), 5 ng/mL human FGF2 (Sino Biological, Cat#10014-HNAE), 1 μmol/L Prostaglandin E2 (MCE, Cat#HY-101952), 0.3 μmol/L CHIR 99021 (Sigma-Aldrich, Cat#SML1046), 1 μmol/L Forskolin (Abcam, Cat#ab120058), 50ng/ml R-spondin (R&D Systems, Cat#3266-RS), 25ng/ml Noggin (PeproTech, Cat#120-10C), and 10 μmol/L Rho-associated kinase (ROCK) inhibitor Y-27632 (TargetMol, Cat#T1725).
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9

Ectocervical Cell Culture Protocol

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Ectocervical cells were cultured in ADF medium supplemented with 12 mM HEPES, 1% GlutaMax, 1% B27, 1% N2, 0.5 µg ml−1 hydrocortisone (Sigma, H0888-1G), 10 ng ml−1 human EGF (Invitrogen, PHG0311), 100 ng ml−1 human noggin, 100 ng ml−1 human FGF10 (Peprotech, 120-10 C, 100-26-25), 1.25 mM N-acetyl-l-cysteine, 10 mM nicotinamide, 2 µM TGF-β receptor kinase Inhibitor IV, 10 µM Y-27632, 10 µM forskolin (Sigma, F6886) and 1% penicillin–streptomycin.
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10

Lung Explant Culture for FGF Signaling

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Lung explant cultures were performed as described (28 (link)). E11.5 embryonic lungs were dissected and cultured on Transwell filters (#3462, Corning Life Sciences) for 48 h in DMEM, 2 μg/ml heparin, at 37°C, 5% CO2. Tissues were treated with mouse or human FGF9 (#100–23, #100–23, PeproTech Inc.) or human FGF10 (#100–26, PeproTech Inc.) at 2.5 ng/ml, or with inhibitors. MEK inhibitor (U01206, #9903, Cell Signaling), 25 μM; PI3K inhibitor (Ly294002, #9901 Cell Signaling), 25 μM; STAT3 inhibitor (Stattic, #S7947, Millipore-Sigma), 10 μM. Lung explants were photographed on a stereo microscope (Olympus SZX12-ILLD100) or inverted microscope (Leica, DM IL LED). Duct length was measured using ImageJ software. Data shown is representative of at least three independent experiments.
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