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5 protocols using donkey anti mouse alexa 546

1

Immunofluorescent Labeling of Neuronal Markers

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Sections were incubated in primary antibody in 0.01 M PBS with 5% bovine serum albumin and 0.3% Triton at 4°C overnight. Primary antibody was removed by washing three times for 5 min each in 0.01 M PBS. Sections were then incubated with appropriate secondary antibodies for 2 h at room temperature in 0.01 M PBS with 0.3% triton and 5% normal donkey serum, and then washed in 0.01 M PBS three times for 5 min. Slides were then coverslipped using Mowiol mounting medium. Primary antibodies used were rabbit anti-GFAP (1:2,000, Dako), mouse anti-NeuN (1:500, Millipore), and mouse anti-MAP2 (1:500, Sigma). Secondary antibodies used were donkey anti-rabbit Alexa 488 (Invitrogen), donkey anti-mouse Alexa 546 (Invitrogen), and donkey anti-mouse Cy3 (Jackson ImmunoResearch Inc.). All secondary antibodies were applied at a dilution of 1:1,000.
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2

Protein Localization Imaging Technique

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The following primary antibodies were used: rabbit anti-GFP (1:400, Life Technologies A6455), Guinea pig anti-Sens (1:1000, a kind gift from Hugo Bellen, Baylor College of Medicine), rat anti-Distalless (1:100, a kind gift from Marc Bourouis, Institut de Biologie Valrose), mouse Anti-Wg (1:100, DSHB 4D4), mouse anti-Arm (1:10 DSHB N2 7A1). Rat anti-DE-cadherin (1:50, DSHB DCAD2).
The following secondary antibodies were used: goat anti-rabbit Alexa488 (1:500; Invitrogen A11034), goat anti-rabbit Alexa546 (1:500; Invitrogen A11035), donkey anti-mouse Alexa488 (1:500; InvitrogenA21202), donkey anti-mouse Alexa546 (1:500; Invitrogen A10036), donkey anti-rat Alexa488 (Invitrogen A21208), goat anti-rat Alexa546 (1:500; Invitrogen A11081) and TRITC-phalloidin (1:100; Sigma-Aldrich P1951-1MG).
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3

Immunofluorescent Staining of Cultured Fibroblasts

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We fixed the cultured fibroblasts with 4% freshly buffered
paraformaldehyde, washed with phosphate buffered saline
without Ca2+ and Mg2+ (PBS), and incubated with 10% goat
serum, followed by incubation with primary antibody mouse
anti-vimentin (Millipore, MAB1687, 1:100) and anti-collagen
type 1 (Abcam, ab90395, 1:50). Then, we washed the cells
with PBS-and incubated with Donkey anti mouse Alexa 546
(Invitrogen, USA), and anti-mouse IgG (Sigma, USA) for 60
minutes at room temperature. Nuclei were counter-stained
with 5 µg/ml of 4’, 6-diamidino-2-phenylindole (DAPI) and
analyzed by fluorescent microscopy (Nikon, Japan).
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4

Analysis of Elastic Fiber Formation in HDFneo

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To analyse the ability of transduced and non-transduced HDFneo to generate elastic fibres, cells were seeded into chambered coverglasses (LabTek®, Nunc, Penfield, USA). Cells were grown for 14 days with 10 ng/mL TGF-β1 or left untreated as a control. Afterwards, cells were washed twice with PBS, fixed with methanol:acetone (1:1) at −20 °C and washed again twice with PBS at room temperature (RT). For immunostaining, samples were first incubated with PBS containing 1% BSA (blocking buffer) for at least 1 h at RT and subsequently labelled with the primary antibodies polyclonal rabbit anti human TE/elastin (1:200; Abcam) and monoclonal mouse anti fibrillin-1 clone 11C1.3 (1:100; Dianova GmbH, Hamburg, Germany) in blocking buffer. After three washing steps with PBS at RT, incubation with secondary antibodies was done with donkey anti rabbit Alexa 647 and donkey anti mouse Alexa 546 (both 1:1000; Life Technologies, Carlsbad, USA) in blocking buffer. Counterstaining of cell nuclei was carried out using DAPI (1 μg/mL in PBS; Roche, Basel, Switzerland).
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5

Retinal Cryosectioning and Flatmount Immunostaining

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For cryosections, two different pieces of each retina were excised (Figure 1B). One from the superior ora serrata to the optic nerve head and one from the inferior ora serrata to the optic nerve head. These parts were sectioned vertically at 16 µm on a cryostat embedded in OCT medium (Jung, Nussloch, Germany). Immunocytochemical labeling was done as described previously [37] (link).
For flatmount staining, the nasal part of the retina (Figure 1B) was excised. Retinae were washed several times in PBS at RT and then incubated with a mixture of opsin antibodies diluted in 3% normal donkey serum, 1% bovine serum albumin, and 1% Triton X-100 in PBS for three days at 4°C. After several washing steps in PBS the retinae were incubated with secondary antibodies for 2 h at RT in the same incubation solution as before. Thereafter, retinae were washed in PBS, mounted in Aqua Polymount medium (Polysciences) and stored at 4°C for microscopy. For detailed information about primary antibody see Table 1.
The following secondary antibodies were used: donkey anti-rabbit Alexa 488, donkey anti-mouse Alexa 546 (Life Technology, Darmstadt, Germany), donkey anti-mouse Cy3 and donkey anti-goat Cy3 (Dianova, Hamburg, Germany). All were diluted 1∶500.
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