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19 protocols using p2256

1

Glucose Tolerance and Insulin Sensitivity

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Basal blood glucose levels were measured after an overnight fast (12 h) for the GTT, PTT, and GlyTT; and after 6 h for the ITT, with a Glucocard Glucometer (ARKRAY, USA). GTT, ITT, PTT, and GlyTT were done after an IP of either 2 g kg−1d-glucose (Sigma-Aldrich, G8270), 0.35 U kg−1 insulin (Actrapid, Novo Nordisk), 1.25 g kg−1 sodium pyruvate (Sigma-Aldrich, P2256), and 1 g kg−1 glycerol (Sigma-Aldrich, G5516), and area under the curve values were determined.
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2

Characterization of OPA1 Mutant Cell Lines

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MEFs stably expressing wt OPA1 isoforms 1 or OPA1 isoform 1 bearing the R445H or D603H mutations were previously described (27 (link),84 (link)).
Skin fibroblasts were derived, after having obtained informed written consent, from five healthy donors and two DOA patients carrying the heterozygous R445H and D603H OPA1 mutations, respectively, as previously described in (27 (link)).
MEFs and fibroblasts were grown in DMEM (Gibco, Life Technologies, 21969035) containing 25 mm glucose supplemented with 10% fetal bovine serum (FBS, South America, Gibco, Life Technologies, 10270-106), 2 mm l-glutamine (Gibco, Life Technologies, 15140-122), 100 U/ml penicillin and 100 μg/ml streptomycin (Gibco, Life Technologies, 25030-024), in an incubator with a humidified atmosphere of 5% CO2 at 37°C. For some experiments, cells were grown in glucose-free DMEM (Gibco, Life Technologies, 11966025) supplemented with 5 mm galactose (Merck, 825V622860), 5 mm sodium pyruvate (Sigma, P2256) and 5% FBS (DMEM-galactose). For evaluation of autophagic flux, MEFs were treated with 1 μm rapamycin (Sigma, R0395) for 24 h and with 80 μm chloroquine diphosphate salt (Sigma, C6628) for 2 h.
MEFs and fibroblasts were grown on Falcon plastic ware (flasks, dishes, multiwells).
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3

Anthocyanin Treatment of U-87 MG Cells

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The human U-87 MG cell line was purchased from American Type Culture Collection (Manassas, VA). Cells were maintained in Eagle’s Minimal Essential Medium (Wisent, 320-036-CL) supplemented with 10% calf serum (HyClone Laboratories, SH30541.03), 1 mM sodium pyruvate (Sigma-Aldrich, P2256), 2 mM L-glutamine, 100 units/mL penicillin and 100 mg/mL streptomycin (Wisent, 450–202-EL), and cultured at 37°C under a humidified 95%–5% (v/v) mixture of air and CO2. Cells were treated with vehicle (0.1% ethanol) or with anthocyanidins in the absence of serum prior to (pre-treatment), along with (co-treatment) or following (post-treatment) addition of 10 ng/mL TGF-β.
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4

NAD(P)H Imaging in Starved Cells

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1 × 105 MCF10A cells were seeded 24 hours prior to starvation in 35 mm glass-bottom dishes. Then, standard media was replaced with glucose-free, pyruvate-free, and serum-free DMEM (#11966, Gibco) overnight. FLIM images of NAD(P)H in three fields of view were taken in each dish immediately before and immediately after the replacement of media with fresh serum-free media containing either 10 mM sodium pyruvate or 10 mM sodium lactate (#P2256 and #L7022, Sigma). A total of 200–300 cells were imaged per condition, and individual cells were analyzed. This experiment was repeated in triplicate.
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5

Isolation and Culture of Human Mesenchymal Stem Cells

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Human mesenchymal stem cells (MSC) were isolated from normal (non-diabetic) adult human bone marrow of normal volunteers and purchased from Lonza Cologne (Cologne, Germany). Incubation was performed as described [35 ]. The cells were maintained in 75 cm2 flasks and cultivated in α-MEM (Cat. no. F0915; Biochrom, Berlin, Germany), supplemented with 20% FCS (fetal calf serum; Biochrom, Berlin, Germany) and 0.5 mg mL−1 of gentamycin, 100 units mL−1 penicillin, 100 mg mL−1 of streptomycin and 1 mM pyruvate (#P2256 Sigma-Aldrich, Taufkirchen; Germany). Incubation was performed in a humidified incubator at 37 °C.
For cell viability and gene expression studies the MSC cultures were inoculated with 1 × 104 cells per well (48 well plates (#CLS3548; Sigma-Corning, Taufkirchen, Germany)) in a total volume of 0.5 mL. The cultures were first incubated for a period of three days in the absence of the mineralization-activating cocktail (MAC). Subsequently, the cultures were used for the cell viability studies. For the gene expression studies the cells were incubated for a total period 21 days in the presence of MAC, comprising 50 mM ascorbic acid and 10 nM dexamethasone to induce biomineralization [36 (link)]. The third component usually used in the MAC, β-glycerophosphate, was omitted since polyP has been shown to be sufficient as a phosphate supply [37 (link)].
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6

Glucose and Insulin Tolerance Tests

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Basal blood glucose levels were measured after an overnight fast (12 h) for the GTT, GlyTT and PTT, and after 6h for the ITT, with a Glucocard Glucometer (ARKRAY, USA). GTT, ITT, PTT and GlyTT were done after an intraperitoneal injection of either 2 g kg−1 D-glucose (Sigma-Aldrich, G8270), 0.35 U kg−1 insulin (Actrapid, Novo Nordisk), 1.25 g kg−1 sodium pyruvate (Sigma-Aldrich, P2256), or 1 g kg−1 glycerol (Sigma-Aldrich, G5516), and area under the curve (AUC) values were determined.
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7

Mitochondrial Respiration Profiling

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For measurement of the mitochondrial oxygen consumption rate, 150 μg of freshly isolated mitochondria was used and measured by high-resolution respirometry at 27 °C (Oxygraph-2k series C and G, OROBOROS Instruments, Innsbruck, Austria). Mitochondria were injected into a chamber with 2 ml of air-saturated buffer (0.3 M sucrose, 10 mM KH2PO4, 5 mM MgCl2, 1 mM EGTA, 10 mM KCl and 0.1% BSA; pH 7.2) in presence vs. absence of 1 μM SM19. To stimulate complex I-dependent phosphorylating respiration in the presence of ADP, 10 mM pyruvate (Sigma-Aldrich, P2256), 2 mM malate (Sigma-Aldrich, M1000) and 1.5 mM ADP (Sigma-Aldrich, A5285) was added.99 (link) When oxygen consumption reached a constant level, 1 mM potassium cyanide (KCN, inhibitor of cytochrome c oxidase (COX)) and 1 mM salicylhydroxamic acid (SHAM, inhibitor of the alternative oxidase (AOX)) were added to completely block respiration. Wild-type and ΔPaCrd1 mitochondria were analyzed in presence of absence of 1 μM SM19. For analyzing the data, the manufacturer's software DatLab 6 was used.
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8

Primary Neuronal Culture from Transgenic Mice

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Primary neuronal cultures were prepared from the hippocampi of embryonic day 17.5 embryos from WT and PRRT2 KO mice of either sex, as previously described [12 (link)]. For low-density cultures, neurons were plated on poly-l-lysine (PLL; 0.2 mg/mL; Sigma #P2636)-coated 24 mm glass coverslips at a density of 120,000 cells per coverslip, and maintained as a sandwich co-culture with astroglia in modified Eagle’s medium (MEM Invitrogen, Carlsbad, CA, USA) supplemented with 1% N2 supplement (Gibco #1502-048), 2 mM l-glutamine, 1 mM sodium pyruvate (Sigma #P2256), and 4 mM glucose at 37 °C in 5% CO2 humidified atmosphere [13 (link)]. When indicated, PLL-coated coverslips were subsequently coated with laminin (LN; 20 μg/mL; Sigma #L2020).
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9

Isolation and Culture of Mouse Proximal Tubular Cells

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The kidneys were harvested from Ctns knockout mice and from their corresponding control littermates: one kidney was transversally split, and one half was fixed and processed for immunostaining while the other half was flash-frozen, homogenized by Dounce homogenizer in 1 mL of RIPA buffer that contains protease and phosphatase inhibitors and processed for western blot analysis. The contralateral kidney was taken to generate primary cultures of mPTCs4 (link). Freshly microdissected PT segments were seeded onto collagen-coated chamber slides (C7182, Sigma-Aldrich) and/or collagen coated 6- or 24-well plates (145380 or 142475, Thermo Fisher Scientific), and cultured at 37 °C and 5% CO2 in DMEM/F12 (21041-025, Thermo Fisher Scientific) with 0.5% dialyzed fetal bovine serum (FBS), 15 mM HEPES (H0887, Sigma-Aldrich), 0.55 mM sodium pyruvate (P2256, Sigma Aldrich), 0.1 ml L−1 non-essential amino acids (M7145, Sigma Aldrich), hydrocortisone, human EGF, epinephrine, insulin, triiodothyronine, TF, and gentamicin/amphotericin (Single Quots® kit, CC‒4127, Lonza), pH 7.40, 325 mOsm kg−1. The medium was replaced every 48 h. Confluent monolayers of mPTCs were expanded from the tubular fragments after 6–7 days, characterized by a high endocytic uptake capacity. These cells were negatively tested for mycoplasma contamination.
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10

Glucose Deprivation and Insulin Stimulation in HepG2

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HepG2 TMEM127 KO or control cells were transferred to a 12-well plate at a density of 1 × 106 cells/well and cultured for 28 h incubated in glucose-free Dulbecco’s modified Eagle’s medium (Thermo Fisher Gibco, catalog no. D1050) supplemented with 2 mm-pyruvate(Sigma, catalog no. P2256) or phosphate-buffered saline (PBS) overnight, then Insulin 100 μm or PBS were added for 30 min and cells were harvested for RNA.
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