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2 protocols using nupage novex 4 12 gels

1

Protein Extraction and Western Blot Analysis

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The dissected CPu and NAc (Famous et al., 2008 (link); Jin et al., 2019 (link)) were homogenized in a radioimmunoprecipitation assay buffer containing 20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% sodium deoxycholate, 1% NP-40, 2.5 mM sodium pyrophosphate, 1 mM Na3VO4, 1 mM β-glycerophosphate, 1 μg/ml leupeptin, and a protease/phosphatase inhibitor cocktail (Thermo Scientific, Rochester, NY). Homogenates were centrifuged at 800 g (10 min, 4°C). Supernatants were collected and protein concentrations were determined. Western blot assays were conducted as described previously (Jin et al., 2013 (link)). Briefly, sodium dodecyl sulfate NuPAGE Novex 4–12% gels (Invitrogen, Carlsbad, CA) were used for separation of proteins. Separated proteins on gels were then transferred to polyvinylidene fluoride membranes. Membranes were blocked and washed. They were incubated with a primary rabbit antibody (see below) overnight at 4°C. An anti-rabbit secondary antibody was incubated with membranes. We used an enhanced chemiluminescence reagent (GE Healthcare Life Sciences, Piscataway, NJ) to visualize proteins. Optical density of immunoblot bands was measured using NIH ImageJ analysis software. All optical density values were normalized to a loading control protein (actin).
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2

Quantifying STAT1 Signaling Dynamics

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1x106 PBMCs/ml were incubated in 24 well- plates with 50 ng/ml of recombinant human IFN-γ (PeproTech) for 0 (at rest), 30, 120 and 180 min in complete RPMI medium. To ensure equal loading, protein concentrations were assessed via Pierce™ BCA Protein Assay Kit (Thermo Scientific). Lysates were denatured in 1x LDS buffer (Invitrogen) then boiled for 10 mins at 70°C. Lysates were then run on NuPAGE Novex 4-12% gels (Invitrogen) with Spectra Multicolour Broad Range Protein Ladder (Invitrogen). Electrophoresis was run a 350A for 1 hour to transfer protein to a PDVF membrane. Membranes were then blocked with 5% non-fat milk in 1x Tris buffered saline with 0.1% Tween20 (Sigma) (TBST) for 1 hour at room temperature. Primary antibodies used were B-actin, Phospho-STAT1, STAT1, pJAK1, STAT3, pSTAT3, Cyclophilin B, NFKB1, pAKT, AKT SOCS1, FAK, and JAK2 (all Cell Signaling). Membranes were incubated overnight with primary antibodies, then washed 3x 10mins with TBST, before being incubated with a rabbit HRP-conjugated secondary antibody for 1 hours at room temperature. Membranes were washed a further 3x 10mins with TBST then developed with chemiluminescence ECL or Femto (Thermo Fisher).
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