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3 protocols using anti erk

1

Signaling Pathway Characterization Protocol

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Antibodies anti-HA (Babco), anti-RSK2, anti-APPL1, anti-Rab7, anti-TrkB (Santa Cruz Bio-technology), anti-PLD1, anti-ERK, anti-phospho-ERK, (New England BioLabs), anti-β-tubulin, anti-CREB (Millipore), anti-GAPDH, anti-phospho-CREB (Ser-133), anti-mTOR, anti-phospho-mTOR (Ser-2481), anti-phospho-S6K (Thr-389), anti-phospho-S6K (Thr-421/Ser-424), anti-PEA15 (Cell Signalling), anti-Rab5 (Transduction Laboratories) were used. Plasmids have been described previously15 (link)17 (link). ON-TARGETplus siRNA were obtained from Darmacon and BDNF was from Invitrogen.
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2

Analysis of Cardiac Signaling Pathways

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Frozen muscle strips or pieces of the left ventricle were thawed on ice in 50 μL of homogenization buffer [1% (v/v) NP 40 (IGEPAL CA‐630), 10% (v/v) glycerol, 137 mM NaCl, 20 mM Tris–HCl pH 7,4, 20 mM NaF, 1 mM Na‐orthovanadate, 1 mM Na‐pyrophosphate, 50 mM β‐glycerophosphate, 10 mM ethylene‐diamine‐tetra‐acetic acid (EDTA) pH 8, 1 mM ethylene glycol‐bis‐(2‐aminoethyl)‐tetra‐acetic acid (EGTA) pH 7, 4 μg/mL aprotinin, 4 μg/mL leupeptin, 4 μg/mL pepstatin A, 1 mM phenylmethanesulfonyl fluoride (PMSF)] and homogenized. Protein of the suspensions was determined with BCA™ Protein Assay Kit (Pierce Biotechnology, Rockford, IL, USA) and 20 μg of samples subjected to SDS‐PAGE. Western blotting was carried out according to standard protocols. The following antibodies were used: anti‐P‐AKT, anti‐AKT, anti‐P‐GSK3β, anti‐P‐p38, anti‐P‐ERK, anti‐ERK, anti‐P‐JNK (New England Biolabs, Ipswich, MA, USA), anti‐GAPDH (BioTrend, Cologne, Germany), anti‐mouse IgG, horseradish peroxidase‐linked, and anti‐rabbit IgG horseradish peroxidase‐linked (Amersham Biosciences, Freiburg).
For quantification, an enhanced chemo luminescence detection system (Amersham) was used according to the manufacturer's instructions.
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3

Western Blotting Analysis of HERV-K Proteins

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Western blotting (WB) was performed as previously described (19) using anti-HERV-K Env (cat# HERM-1811-5; AMSBIO), anti-HERV-K Gag (cat# HERM-1841-5; AMSBIO), anti-phospho ERK (cat# V803A; Promega), anti-ERK (cat# 4695; New England Biolabs), anti-CRL4 DCAF1 (cat# 11612-1-AP; Proteintech), anti-CTGF (cat# ab6992; Abcam), anti-YAP (cat# 14074; New England Biolabs), anti-Pan TEAD (cat# 13295; New England Biolabs), anti-CD63 (cat# 10628D; Thermo Fisher Scientific), and anti-Merlin (cat# 6995; New England Biolabs) antibodies. For detection, secondary horseradish peroxidase (HRP)-conjugated antibodies (cat# 170-6516 and cat# 172-1019; Biorad) and Pierce ECL or Pierce ECL Plus substrates (cat# 32209 and cat# 32132 Â 3; Thermo Fisher Scientific) were used. Anti-GAPDH (cat# MAB374; Merck Millipore) and anti-tubulin a (ab4074; Abcam) antibodies were used for loading controls. WB band densities were quantified using ImageJ software.
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