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10 protocols using gentamicin

1

Immunomodulatory Compound Procurement

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Rapamycin (aka. Sirolimus) was purchased from LC Laboratories (Woburn, Massachusetts), GSK-2126458 and KU-0063794 were obtained from Selleck Chemicals (Houston, Texas). Fetal Calf Serum (FCS) was obtained from Gibco (Montgomery County, Maryland). Gentamicin was obtained from Biosera (Heathfield, East Sussex). IL-4 and IFN-γ ELISA kits were purchased from eBioscience (San Diego, California). All other materials such as Schneider and RPMI-1640 media were purchased from Sigma-Aldrich (Oakville, Ontario).
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2

Quantifying Parasite Burden in Mice

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To estimate the parasite number after infection, 4–6 mice per group were randomly selected and the popliteal lymph nodes (LNs) extracted, weighed, and homogenized in Schneider’s Drosophila medium (Sigma) enriched with 10% hi-FCS plus 50 μg/ml Gentamicin (Biosera). The cell suspension serially was diluted 1:5 (from 10−1 to 10−15) and transferred into two wells of flat bottom 96-well plates (Orange scientific). Growing of parasite in all wells was checked microscopically during 14 days. The well number containing even one live promastigote was recorded and the parasite burden computed using the following formula: -Log10 (last dilution with live parasites/weight of homogenized LN) [42 (link)].
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3

Biscoumarin Effects on A549 and CCD-18Co Cells

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Human lung carcinoma cell line A549 and CCD-18Co colon fibroblasts were purchased from the American Type Culture Collection (ATCC, Rockville, MD, USA). The A549 cells were cultured in a complete RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, USA), and CCD-18Co cells were cultured in an MEM medium (PAN-Biotech GmbH, Aidenbach, Germany). The media were supplemented with 10% fetal bovine serum (FBS; Biosera, Nuaille, France) and antibiotics (1% Antibiotic-Antimycotic 100× and 50 × 10−3 g l−1 gentamicin; Biosera) at 37 °C, 95% humidity, and 5% CO2.
Prior to the selected treatments, cells were seeded on 12-well μ-Chamber slides (ibidi GmbH, Martinsried, Germany) and 6 and/or 96-well plates (TPP, Trasadingen, Switzerland) and left to settle for 24 h. The biscoumarin derivative solutions (at concentrations ranging from 10–100 µM) were then added to cells for 24 or 48 h, and analysis was subsequently performed.
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4

Characterization of Leishmania Parasites

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A recombinant strain of L. tarentolae parasites expressing A2 and CP genes was already available from our previous study (30 (link)). The L. tarentolae and recombinant L. tarentolae A2-CPA-CPB-CTE parasites were grown in M199 (Sigma, Missouri, USA) supplemented with 5% heat-inactivated fetal calf serum (FCS, Gibco) and 0.1 mM adenosine, 40 mM HEPES (pH 7.2), 5 μg/mL hemin (all chemicals purchased from Sigma), and 50 μg/mL gentamicin (Biosera, France) at 26 °C. The L. infantum strain MCAN/ES/98/LLM-877 was kindly provided by WHO collaborating center for leishmaniasis, Servicio de Parasitología, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Madrid, Spain and kept in virulent state by continuous passage in hamsters. Amastigotes were isolated from the previously-infected hamsters’ spleens and cultured in Novy-MacNeal-Nicolle (NNN) media and prepared for the infectious challenge as described previously (30 (link)). Parasites were frozen and thawed (F/T) and protein concentration of the lysate was determined by bicinchoninic acid reagent (BCA, PIERCE, Chemical Co. Rochford III).
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5

Murine 4T1 Breast Cancer Model

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Female BALB/c mice, 8-week-old, were purchased from the Pasteur Institute of Iran and housed under standard conditions of diet and light in the animal facility. The 4T1 cell line (ATCC CRL-2539) was obtained from the Pasteur Institute of Iran (National Cell Bank of Iran). The 4T1 and COS-7 cells were cultured in RPMI-1640 medium (Sigma, St. Louis, USA) supplemented with 10% heat-inactivated fetal bovine serum (FBS; Gibco, Waltham, USA), 2 mM L-glutamine (Sigma) and 50 µg/mL gentamicin (Biosera, Boussens, France) in a humidified atmosphere with 5% CO2 at 37℃. Subculturing was carried out every 2 to 3 days. The cells were detached by using a solution containing 0.25% trypsin and 1 mM EDTA (Sigma).
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6

Cell Culture Conditions for Cancer and Healthy Cell Lines

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HT-29, HCT 116, SW620, CCD-18Co and CCD-1072Sk cell cultures were purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). HT-29 and SW620 cells were cultured in complete RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, USA), HCT 116 cells in McCoy’s medium (PAN-Biotech GmbH, Aidenbach, Germany), CCD-18Co and CCD-1072Sk in MEM medium (Biosera, Nuaille, France). All cultivation media were supplemented with 10% fetal bovine serum (Biosera, Nuaille, France) and antibiotics (1% antibiotic-antimycotic 100 × and 50 μg/mL gentamicin; Biosera, Nuaille, France).
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7

Cell Culture of Colorectal Cancer Lines

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HT-29, HCT 116, and CT26.WT cells were purchased from the American Type Culture Collection (ATCC, Rockville, MD, USA). HT-29 and CT26.WT cells were cultured in complete RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, USA) and HCT 116 cells in complete McCoy’s medium (PAN-Biotech GmbH, Aidenbach, Germany). Both cultivation media were supplemented with 10% fetal bovine serum (FBS; Biosera, Nuaille, France) and antibiotics (1% antibiotic-antimycotic 100× and 50 µg ml−1 gentamicin; Biosera, Nuaille, France) at 37 °C, 95% humidity, and in an atmosphere of 5% CO2.
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8

Cell Culture Reagent Procurement

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Dulbecco’s modified eagle medium (DMEM), fetal bovine serum (FBS), penicillin/streptomycin and gentamicin were all obtained from Biosera (Nuaillé, France). Type II collagen purchased from Sigma Aldrich (St. Louis, MO, USA). All other chemicals used were of the best commercially available grade.
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9

Insulin-Mediated Metabolic Responses in TR146 Cells

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TR146 cell line was purchased from Public Health England, UK. Human recombinant insulin, L-arginine (non-animal source, cell culture tested), L-lysine (≥97%), L-histidine (≥Reagent Plus 99%), L-glutamic acid (minimum 99% TLC), L-aspartic acid (99%), sodium deoxycholate, thiazolyl blue tetrazolium bromide (methylthiazolydiphenyl-tetrazolium bromide; ≥97%; enzymatic), dimethyl sulfoxide (DMSO) and trifluoroacetic acid were purchased from Sigma-Aldrich, UK. Hanks balanced salt solution (HBSS), Fetal bovine saline (FBS) were obtained from Gibco Lab., UK. Acetoniltrile and absolute ethanol were purchased from Fisher scientific, UK. Hank’s balanced salt solution (HBSS), fetal bovine serum (FBS), Hams F-12 nutrient mix and trypsin-EDTA were obtained from Gibco® Lab., UK. Gentamicin and penicillin/ streptomycin were obtained from Bio Sera, UK. Acetoniltrile and absolute ethanol were purchased from Fisher scientific, UK. 6 well plates, 6 well polycarbonate transwell inserts and 12 well polyester transwell inserts were purchased from Appletonwoods, UK. All the chemicals and reagents were used as obtained. All water used was double-distilled and autoclaved.
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10

Culturing Leishmania Promastigotes from Biopsies

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The fragmented biopsy from the border of the ulcers were collected and inoculated into Schneider’s Drosophila medium (Sigma, Darmstadt, Germany), supplemented with 10% heat- inactivated fetal bovine serum (FBS, Gibco, UK), 40 mM HEPES, 2 mM, 0.1 mM adenosine, 2 mM L-glutamine, 0.5μg/ml hemin (all from Sigma, Germany) and 50 μg/ml gentamicin (Biosera, France) and incubated at 26°C. Cultures were checked microscopically for live and motile promastigotes for maximum of 3–4 weeks.
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