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9 protocols using cabazitaxel

1

Amygdalin Effects on Taxane-Resistant Cells

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Resistant sublines were established by continuous exposure to increasing concentrations of the respective drugs, as described before [13 (link)]. The docetaxel-resistant tumor cells were exposed to 2.5 ng/mL docetaxel (Sanofi, Paris, France), and cabazitaxel-resistant tumor cells were exposed to 2.5 ng/mL cabazitaxel (Sanofi, Paris, France) three times a week.
amygdalin from apricot kernels (Sigma-Aldrich, Taufkirchen, Germany) was freshly dissolved in cell culture medium and added to tumor cells at 10 mg/mL based on earlier studies [14 (link)]. Controls remained untreated. In all experiments, treated tumor cell cultures were compared to nontreated cultures. To assess toxic effects of amygdalin and/or docetaxel and cabazitaxel, cell viability was determined by trypan blue (Gibco/Invitrogen).
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2

Drug Sensitivity Screening of Patient-Derived Organoids

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Depending on the originating PDX model, organoids formed after four to fourteen days of in vitro culture. Preassembled PDXOs were retrieved from the hydrogel domes by gently dissolving the thermo-sensitive hydrogel with ice-cold medium, and then passing them through a 100 μm cell strainer to eliminate large organoids and reduce size heterogeneity at the start of the experiment. Pooled PDXOs were carefully resuspended in Noviogel-P5K (medium-gel ratio 64.5:35.5) and seeded as eight μL hydrogel domes in 96-well plates, with an organoid density of 5000–10,000 per dome. Four days later, drug exposure was initiated: the culture medium was exchanged for medium containing the appropriate concentration of docetaxel (microtubule stabilizer; logarithmic dose range: 0.01–30 nM; Sanofi, Paris, France), cabazitaxel (microtubule stabilizer; logarithmic dose range: 0.01–30 nM; Sanofi), enzalutamide (anti-androgen; logarithmic dose range: 0.1–30 μM; Axon Medchem, Groningen, The Netherlands, cat. no. 1613), a vehicle (for negative controls) or staurosporine (broad-spectrum protein kinase inhibitor; 1 μM for positive controls; Selleckchem, Houston, TX, USA, cat. no. S1421). PDXOs were exposed for a total duration of 10 days, followed by viability assessment or confocal live-cell imaging.
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3

Docetaxel and Cabazitaxel Formulations for In Vivo Experiments

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Docetaxel and cabazitaxel (Sanofi, Vitry-sur-Seine, France) formulations were prepared in polysorbate-80-ethanol (1 : 1, v/v) and further diluted in 5% (w/v) glucose solution to a final concentration of 2.5 mg ml−1 for in vivo experiments. In uptake assays, [14C]-Docetaxel and [14C]-cabazitaxel (specific activity: 83–86 mCi −1mmol l−1; Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany) were used.
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4

Cabazitaxel Chemotherapy Protocol

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Cabazitaxel was provided by Sanofi (Paris, France). It was administered intravenously at an initial dose of 25 mg/m2 over 1 hour every 3 weeks up to 10 cycles. Primary prophylaxis with granulocyte-colony stimulating factor (G-CSF) was mandatory. In the case of toxicity the dose could be reduced to 20 mg/m2. No further dose reduction was allowed and patients were withdrawn after recurrent toxicity.
Tumor assessments were performed every 6 weeks by computed tomography imaging.
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5

Prostate Cancer Cell Line Characterization

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PC3 and DU145 cell lines were purchased from the American Type Culture Collection (Manassas, VA, USA) and cultured in RPMI 1640 with 10% fetal calf serum, 1.3 μM insulin, and 10 mM HEPES. These cell lines were authenticated by CellBank Australia using Short Tandem Repeat profiling.
MiR-217 and miR-181b mimics (miRIDIAN microRNA mimics), and ON-TARGETplus non-targeting control siRNA SMARTpool were purchased from GE Healthcare Dharmacon. Docetaxel (clinical-grade) was purchased from Sanofi-Aventis, Australia, and prepared according to manufacturer’s instruction. Cabazitaxel was provided by Sanofi-Aventis and dissolved in 56% ethanol and 10% polysorbate 80 at 5 mg/ml. Working stocks of both drugs were prepared in phosphate-buffered saline or culture medium.
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6

Cytoskeletal Protein Assay Protocol

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Docetaxel and sulforhodamine B were purchased from Sigma-Aldrich (St. Louis, MO). Cabazitaxel (Sanofi, Bridgewater, NJ) was a generous gift from Dr. Robert Nagourny (Rational Therapeutics, Long Beach, CA). Ellagic acid was obtained from Indofine Chemical (Hillsborough, NJ). Urolithin A was obtained from Santa Cruz (Dallas, TX). Protocatechuic acid was purchased from LKT Labs (St. Paul, MN). Purified tubulin protein was purchased from Cytoskeleton (Denver, CO). Phenol-red free matrigel was obtained from Corning (Bedford, MA). DMSO, ethanol, and trichloroacetic acid were obtained from Thermo Fisher Scientific (Waltham, MA). Antibodies against β-actin (catalog #3700), β-tubulin (#2128), anti-mouse Alexa Fluor 488 (#4408), and anti-rabbit Alexa Fluor 555 (#4413) were obtained from Cell Signaling Technologies (Danvers, MA). GAPDH (#365062) antibody was obtained from Santa Cruz Biotechnology (Dallas, TX). IRDye 800 anti-rabbit (#926-32211) and IRDye 680 anti-mouse (#926-68070) antibodies were obtained from Li-Cor Biotechnology (Lincoln, NE).
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7

Organoid-based Anticancer Drug Screening

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The AR-negative (AR-) MSK-PCa1 and AR-positive (AR+) MSK-PCa2 organoid lines were kindly provided by Dr. Wouter Karthaus and Prof. Dr. Jack Schalken from the Radboud University Medical Center. Organoids were cultured and passaged as described previously [9 (link),33 (link)], with the addition of synthetic androgen R1881 (1 nM; Sigma-Aldrich, Saint Louis, Missouri, USA, cat. no. R0908) for MSK-PCa2 organoids. Viability assays were conducted in pre-warmed 96-well plates (Costar, Corning, New York, NY, USA, cat. no. 3595) at a plating density of 2500 MSK-PCa1 or 5000 MSK-PCa2 organoid cells in 8 µL Matrigel domes (Corning, cat. no. 356231) per well. Single cells or organoids were incubated for 7 days with a dose range of docetaxel, cabazitaxel (0.01–10 nM; provided by Sanofi, Paris, France), abiraterone (0.03–30 µM; provided by Sanofi) or enzalutamide (0.03–30 µM; Axon Medchem, Groningen, the Netherlands, cat. no. 1613). Viability was measured with CellTiter-Glo 3D according to the manufacturer’s protocol (Promega, Madison, WI, USA, cat. no. G9681).
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8

Preparation of Chemotherapeutic Agents

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Cisplatin (solvent: 0.9% aqueous NaCl solution) was purchased from Gry-Pharma (Kirchzarten, Germany), gemcitabine (solvent: 0.9% aqueous NaCl solution) from Lilly (Bad Homburg, Germany), vinflunine [solvent: phosphate-buffered saline (PBS)] from Pierre Fabre (Freiburg, Germany), pemetrexed (solvent: DMSO) from Lilly, methotrexate (solvent: PBS) from Hexal (Holzkirchen, Germany), carboplatin (solvent: 5% aqueous glucose solution) from Hexal, oxaliplatin (solvent: PBS) from Teva (Basel, Switzerland), paclitaxel (solvent: DMSO) from Bristol-Myers Squibb (New York, NY), topotecan (solvent: dH2O) from GlaxoSmithKline (London, United Kingdom), docetaxel (solvent: DMSO) from Sanofi (Paris, France), cabazitaxel (solvent: DMSO) from Sanofi, larotaxel (solvent: DMSO) from Shanghai Fuhe Chemistry Technology (Shanghai, China), vinblastine (solvent: PBS) from Teva, doxorubicin (solvent: 0.9% aqueous NaCl solution) from Sigma-Aldrich (St Louis, MO), mitomycin c (solvent: dH2O) from Medac (Wedel, Germany), and 5-fluorouracil (solvent: 0.9% aqueous NaCl solution) from Medac.
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9

Synthesis and Characterization of Rhizochalinin

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Rhizochalinin (Rhiz, rhizochalin aglycon, Figure 1A), was synthesized from rhizochalin through hydrolysis as reported previously [8 (link)]. For in vitro experiments the 2 mM stock solution of Rhiz in DMSO was used. The purity of the compound was verified by HPLC, 1 H and 13 C NMR spectroscopy. Anisomycin and docetaxel (10 mg/mL) were purchased from NeoCorp (Weilheim, Germany), 3-methyladenine and z-VAD(OMe)-fmk from Enzo Life Sciences (Farmingdale, NY, USA). Matrigel was purchased from BD Biosciences (San Jose, CA, USA); MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) reagent, propidium iodide (PI) and chloroquine from Sigma (Taufkirchen, Germany); annexin-V-FITC from BD Bioscience (San Jose, CA, USA); enzalutamide and minoxidil from Selleckchem (Munich, Germany); diazoxide from R&D Systems (Wiesbaden, Germany); bafilomycin A1 and rapamycin from LC Laboratories (Woburn, MA, USA); cabazitaxel (10 mg/mL) was provided by Sanofi (Paris, France). Antibodies used were obtained commercially and are listed in Supplementary information (Supplementary Table S1). The current research was performed according to the Good laboratory practice regulations (GLPs).
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