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5 protocols using ly51 6c3

1

Isolation and Characterization of Fracture Callus Cells

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We harvested the fractured callus of wild-type or Ccn2Acp5 mice on the 14th day after the fracture. Using a mortar and pestle, each sample was crushed separately and placed in separate 50-ml centrifuge tubes with 10 mL collagenase at 37°C for 30 min Each sample was subjected to continuous enzymatic digestion with collagenase and DNase at 37°C with gentle shaking for 30 min. The digestion step was repeated thrice. The digested cells were filtered through a 70-μm nylon mesh, centrifuged at 200 × g at 4°C, and resuspended in PBS containing 2% FBS. After the cells were washed with PBS, they were resuspended in 50 μL PBS containing 2% FBS. The pellet was stained using fluorescent dye-conjugated antibodies against CD45 (1:100, # 147718, Biolegend, United States), Tie2 (1:100, # 124009, Biolegend), CD51 (alpha V, 1:100, # 104105, Biolegend), Ly-51 (6C3, 1:100, # 108314, Biolegend), Ter119 (1:100, # 116228, Biolegend), CD105 (1:100, # 120406, Biolegend), CD200 (1:50, # 565547, BD Biosciences, United States), and Thy (CD90.2, 1:100, # 105335, Biolegend) for flow cytometry analysis.
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2

Isolation and Sorting of Thymic Epithelial Cells

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Thymus tissue was enzymatically digested with Collagenase/Dispase (2.5 mg/ml; Roche) and DNase 1 (40 mg/ml; Roche). After digestion, CD45+ thymocytes were depleted using anti‐CD45 microbeads and LS columns (Miltenyi Biotec). Antibodies against the following were used to sort TEC populations: CD45 (30‐F11, eBioscience), EpCAM1 (G8.8, eBioscience), I‐Ab (AF6‐120.1, BD Bioscience), Ly51 (6C3, Biolegend), CD80 (16‐10A1, Biolegend). Reagents were conjugated to Pacific Blue, BV 421, BV605, PE, PerCP–eFluor 710, allophycocyanin–eFluor 780. Streptavidin PE‐Cy7 was used to detect biotinylated antibodies. Sorting was performed using a FACS Aria Fusion 1 sorter (BD) with a purity typically >98%.
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3

Immunohistochemistry of Thymus Tissue

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Thymus tissues were fixed with 4% paraformaldehyde and sliced into 10-μm-thick sections. Thymus sections were stained with antibodies specific for Aire (5H12, eBioscience), CCL21 (AAM27, Bio-Rad Laboratories), Ly51 (6C3, BioLegend), and DCLK1 (rabbit polyclonal, abcam) followed by AlexaFluor-conjugated anti-IgG antibodies (Invitrogen). Paraffin sections fixed with 10% formalin solution were deparaffinized and stained with antibody specific for CD3ε (D4V8L, Cell Signaling Technology) followed by AlexaFluor-conjugated anti-IgG antibodies (Invitrogen). Images were visualized with NIS-Elements (Nikon) and analyzed with ImageJ software.
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Isolation and Characterization of Thymic Epithelial Cells

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TEC single-cell suspension were prepared and sorted based on CD45EpCAM+ of cTECs (UEA1-Ly51) and mTECs(UEA-1+Ly51+I-Ab+) as previously described [17 (link)]. Dead cells were excluded upon a fixable eFluor 780 viability dye staining. UEA-1 and CD45 (30-F11) were purchased from Vector Laboratories and BD Biosciences, respectively. The following Abs were purchased from eBioscience: CD16/32 (93) and MHC class II (AF6-120.1). The following Abs were purchased from BioLegend:CD326 (Ep-Cam, G8.8) and Ly-51 (6C3). FACS data were collected using BD LSR flow cytometer and were analyzed using FlowJo version 10 (Tree Star).
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5

Multiparametric Flow Cytometry Analysis

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Cells were prepared as reported elsewhere incubated with antibodies specific for CD45 (30F11; eBioscience), EpCAM (G8.8; DSHB, University of Iowa), MHCII (M5/114.15.2; BioLegend), Ly51 (6C3; BioLegend), UEA‐1 (Reactolab), Pdpn (8.1.1; BioLegend), Aire (5H12; eBioscience), and BrdU. For intracellular staining, cells were fixed, permeabilized (Cytofix/Cytoperm Kit, BD Biosciences), and labeled for the expression of Aire or the incorporation of BrdU. Stained samples were acquired on a FACSAria II flow cytometer and the data were analyzed using the FlowJo (Treestar) software.
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