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45 protocols using bz 8000 microscope

1

Quantitative Histological Analysis of Lung Injury

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For histological analysis, lungs were fixed in formalin and embedded in paraffin. Four micrometer section were stained with hematoxylin and eosin (H&E). Representative images of >3 lung lobes from each mouse are obtained using a BZ-8000 microscope (Keyence, Osaka, Japan) with low and high magnification views. For the quantification of injured lung areas, image processing and digital stitching were performed using BZ-X analyzer (Keyence). The ratio of injured area to whole lobe were assessed in three lobes per animal, and the average ratio of three lobes was calculated.
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2

Myoblast Differentiation Under Uremic Toxin Exposure

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C2C12 myoblast cells were seeded at 12-well plate and cultured overnight. After cell adhesion, cultured medium was changed differentiation medium containing with uremic toxins (IS, IA, PCS, HA, KA, CMPF) and cultured for 7 days. The cell density in each treatment group was the same before changing the culture medium to differentiation medium. Cell morphology was observed by microscopy (Keyence, BZ-8000 microscope, Osaka, Japan). Average myotube diameters of at least 50 myotubes were determined to be 40 μm along the length of the myotube.
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3

VIP Assay and Immunoblotting Analysis

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The VIP assay and subsequent immunoblotting analysis were carried out as described previously [14 (link),17 (link)], with a slight modification; HEK293T cells expressing EGFP-tagged and mChe- or tRFP-tagged proteins were lysed in HMDEKN cell lysis buffer (10 mM HEPES [pH 7.4], 5 mM MgSO4, 1 mM DTT, 0.5 mM EDTA, 25 mM KCl, and 0.5% NP-40) [24 (link)]. Unless otherwise noted, the precipitated glutathione-Sepharose beads bearing fluorescent fusion proteins were observed using a BZ-8000 microscope (Keyence). The precipitated beads were also subjected to immunoblotting analysis, as described previously [17 (link)].
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4

Worm Body Length Influenced by Bacteria

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Synchronised worms were placed on NGM plates spread with OP50 only (OP plates) or along with BL at various concentrations (BL plates; 1•0, 2•0, 3•0 or 5•0 mg/ml) and cultured at 20°C for 96 h. Thereafter, the worms were fixed with 10 % ethanol (Kanto Chemical Co., Inc.) and observed under a BZ8000 microscope (Keyence Corporation). Body length was determined using the ImageJ software (NIH). The body length of the control worms was set as 100 % and >30 worms were evaluated per group.
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5

Migration Assays for Endothelial Cells

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EC migration was analyzed by two different assays. For the scratch wound healing assay, 3.2 × 105 HDMECs were seeded in 35-mm dishes and then exposed to different concentrations of linalool. After 24 h of incubation, four scratches were generated onto the cell monolayer using a 10 µL pipette tip. Immediately after scratching (0 h) and after 6 h, images of the scratches were taken using a phase-contrast microscope (Leica DFC450C;  Leica Microsystems, Wetzlar, Germany). Wound areas were measured using the LAS V4.8 software (Leica Microsystems).
For the transwell migration assay, HDMECs were seeded in 100-mm dishes and then exposed for 24 h to different concentrations of linalool. Thereafter, 2.5 × 105 HDMECs treated with linalool or vehicle were suspended in 500 µL endothelial basal medium (EBM) without supplements and seeded into the inserts of 24-transwell plates (8 µm pores; Corning, Wiesbaden, Germany), while 750 µL EBM containing 1% fetal calf serum (FCS) was added to the bottom chamber. After 5 h of incubation, the non-migrated cells were removed and the migrated cells were stained with Diff-Quick (LT-SYS, Berlin, Germany) and counted under a BZ-8000 microscope (Keyence, Osaka, Japan).
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6

Multicolor Fluorescence Imaging Protocol

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After performing HCS, the reporter cells on 96-well or 24-well black culture plates were analyzed using a BZ-8000 microscope (Keyence, Osaka, Japan). Phase contrast and fluorescence images were obtained at a magnification of 20x. Fluorescence images were collected using the (Ex/Em = 360/460 nm), (Ex/Em = 470/525 nm), and (Ex/Em = 545/605 nm) filters (Keyence) for TagBFP, EGFP, and TagRFP, respectively.
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7

Immunofluorescence Analysis of Tumor Vessels

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Immunofluorescence analysis was performed on 3.5 μm paraffin-embedded sections from xenografts to detect tumor vessels. Paraffin-embedded sections were de-paraffinized and treated as described for immunohistochemistry. Sections were blocked with goat serum for 20 min at room temperature and incubated with rat anti-mouse CD31 antibody (1:20, Dianova, Hamburg, Germany) overnight at 4°C. The next day, the secondary antibody anti-rat IgG (H+L), F(ab’)2 Fragment (Alexa Fluorr555 Conjugate) (1:1000, CST) was applied. Sections were counter-stained with ProLong Gold Antifade Reagent with DAPI. Images were captured with a Keyence BZ-8000 microscope.
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8

In Vivo Tumor Induction Protocol

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To induce tumors in vivo, Hepa1‐6 cells were injected into the spleen using a medium containing 0.2 mL medium 199 (Sigma‐Aldrich) with a concentration of 107 cells/mL.18 The injection was carried out slowly after identifying the spleen. After 7 days of tumor cell injection, the mice were sacrificed, and the liver was extracted and fixed in 10% formalin overnight. Tissue sections of the liver (4 μm thickness) were stained with hematoxylin and eosin (HE) for further analysis. The relative areas occupied by the tumors were calculated as a percentage of the total scanned liver area using a BZ‐8000 microscope (Keyence).
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9

Quantifying Neurite Length in Cell Cultures

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The neurite length of βIII-tubulin-positive cells in the slices was quantified by counting the intersection of fibers with a grid of cycloids (cycloid length: 30 μm) according to a previously described stereological analytical method [26 (link)]. The length density L(A) was calculated with the formula: L(A) = 2 x (ΣQ(A))/(a(frame) x ΣP(ref)), where ΣQ(A) is the total number of intersections of fibers with the cycloids; ΣP(ref) is the total number of points associated with the test frame that fall within the reference area, and a(frame) is the area of the test frame [26 (link)]. Only the fibers that possess an ending connecting to a DAPI-positive nucleus were counted. Stereo Investigator v8.0 (Micro-Bright Field) with an Olympus BX-51 light microscope and MBF Bioscience CX9000 camera were used to define sampling areas and evaluate the cell culture frames.
The neurite length of βIII-tubulin positive cells in slices was also quantified using the Keyence BZ-8000 microscope with Keyence software according to the manufacturer’s instructions. Only the fibers extending from DAPI-positive nuclei were analyzed. For each condition, at least 80 to 100 cells were measured.
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10

Adipogenic Differentiation of Stromal Vascular Fraction

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For assessing adipogenic capacity, 30,000 SVF cells at day 34, 49, 71, and 89 of cultivation were seeded per well in a 48-well dish. Cells were grown to con uence for 24 to 48 hours and differentiated according to the Poietics human adipose-derived stem cell-adipogenesis protocol (Lonza) for 8 days. Differentiated cells were xed with Roti®-Histo x 4% (Carl Roth GmbH, Karlsruhe, Deutschland), double-stained with 10 µg/mL Nile red (Sigma Aldrich, St. Louis, MO, USA) and 40 µg/mL Hoechst 33342 (Sigma Aldrich, St.
Louis, MO, USA), and analyzed using the BZ-8000 microscope (Keyence, Neu-Isenburg, Germany). The percentage of differentiated cells was calculated from the number of counted differentiated cells divided by the total number of cells within an image for a total of three images per cell line. A cell was de ned to be differentiated when containing at least two lipid droplets. Additionally, the cells were stained with Oil Red O (Sigma Aldrich, St. Louis, MO, USA) solution (0.3% in 60% isopropanol) for 15 minutes and washed with H 2 O. Oil Red O was extracted with isopropanol and absorption was measured at 540 nm.
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