The largest database of trusted experimental protocols

Complete edta free cocktail

Manufactured by Roche
Sourced in United States

COmplete EDTA-free cocktail is a laboratory reagent designed for protein extraction and stabilization. It is a ready-to-use solution that does not contain EDTA, a common chelating agent. The product is formulated to efficiently extract and preserve proteins from various biological samples while maintaining their native structure and functionality.

Automatically generated - may contain errors

11 protocols using complete edta free cocktail

1

Cutaneous Lesion Sampling in Infected Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Skin samples from infected mice with visible lesions (displaying redness, edema, ulcer, necrosis, or healing) were excised (we removed 1 cm of cutaneous tissue from around the lesion) and crushed in phosphate-buffered saline (PBS) supplemented with cOmplete EDTA-free cocktail (Roche), with a TissueRuptor (QIAGEN). The resulting suspensions were centrifuged at 3500g for 10 min at 4°C. The supernatants were stored at −80°C. Blood samples were collected by retro-orbital puncture at each clinical stage of infection before tail excision. The blood was centrifuged at 1500g for 10 min to isolate serum, which was recovered and stored at −80°C.
+ Open protocol
+ Expand
2

In vitro Protein Interaction Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Full-length HA-tagged wt-HDAC6, HA-HDAC6-ΔBUZ and BUZ domain mutants, or HA-tagged HIV-1 Vif proteins were expressed in vitro using the rabbit-reticulocytes system, whereas GST, GST-A3G (wt or its mutants) and GST-Vif proteins were expressed in BL21-DE3 E. coli cells. HA-tagged proteins were resuspended in RIPA 1X buffer (PBS 1X, 1% NP40, 0.5% sodium deoxycholate, 0.05% SDS) supplemented with protease inhibitors (complete EDTA Free cocktail, Roche), and then purified using anti-HA Agarose beads following the manufacturer’s recommendations. For extraction of GST proteins, bacteria cells were lysed in Lysis Buffer (50 mM Tris–HCl pH 7.4, 2 mM EDTA, 150 mM NaCl, 1 mM DTT, 1% Triton X-100, 30 μg/mL Lysozyme, and protease inhibitors) and then purified by affinity using GSH-Sepharose beads. 2 μg of purified HA-tagged protein were incubated overnight in RIPA buffer at 4°C with 3 μg of GST, GST-A3G (wt, C97A or D128K mutants), or GST-Vif proteins immobilized on glutathione-Sepharose beads. Then, beads were washed three times in RIPA buffer and the bound cellular proteins were analyzed by Western blotting using the appropriate antibodies. Hence, in vitro expressed, purified and pulled-down HA-tagged wt, ΔBUZ or BUZ constructs of HDAC6, and HIV-1 Vif proteins were analyzed using an anti-HA monoclonal antibody. Loading of GST proteins was analyzed using an anti-GST antibody.
+ Open protocol
+ Expand
3

GST-Fusion Protein Purification and Interaction Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Glutathione S-Transferase (GST) and GST-fusion proteins were purified from Escherichia coli BL21 (DE3) codon plus strain extracts, with glutathione-Sepharose 4B beads (GE Healthcare). Beads carrying the GST or the GST-fusion proteins were equilibrated in the following binding buffer (10 mM Tris-HCL pH 8, 250 mM NaCl, 0.1% NP40 and 2 mg/ml bovine serum albumin (BSA)) in the presence of protease inhibitors (complete EDTA-free cocktail from Roche Molecular Biochemicals) and incubated with radiolabeled proteins synthesized in vitro in the presence of [35S]-methionine using the TnT Coupled Transcription/Translation system (Promega), in binding buffer for 4 h at 4°C. Beads were washed 5× in binding buffer without BSA and bound proteins were fractionated by sodium dodecylsulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and revealed by autoradiography.
+ Open protocol
+ Expand
4

Co-Immunoprecipitation of FBXL8 Interactors

Check if the same lab product or an alternative is used in the 5 most similar protocols
48 h after treatment of the MCF7 and MDA-MB231 cells with FBXL8-siRNA or control siRNAs, Co-IP assay was performed. For Co-IP study with MCF7 or MDA-MB231 total cell lysates, the cells were lysed in CHAPS lysis buffer containing 20 mM Tris-HCl, pH 7.5, 5 mM MgCl2, 137 mM KCl, 1 mM EDTA, 1 mM EGTA, 1% CHAPS and 1 protease inhibitors (complete EDTA-free cocktail, Roche, St. Louis, MO, USA). Then, the cell lysate was precleared by incubating with protein G Sepharose (GE Healthcare, Little Chalfont, UK) at 4 °C for 2 h. The supernatant was incubated overnight at 4 °C with FBXL8 or control IgG2b antibody, followed by a 3-h incubation with protein G Sepharose. The washed immunoprecipitates, resuspended in Laemmli buffer, was boiled at 95 °C for 5 min before immunodetection of FBXL8, CCND2 or IRF5.
+ Open protocol
+ Expand
5

Skin Biopsy Specimen Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Skin biopsy specimens were provided by the Centre de Diagnostic et de Traitement de la Lèpre et de l'Ulcère de Buruli (CDTLUB) of Pobé (Benin). The biopsy specimens were crushed in PBS supplemented with protease inhibitors (cOmplete EDTA-free cocktail, Roche), with a TissueRuptor (QIAGEN), as described for mouse tissues. The resulting suspensions were centrifuged at 3500g for 10 min at 4°C. The resulting supernatants were stored at −80°C.
+ Open protocol
+ Expand
6

Western Blot Analysis of MeCP2 Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
One frozen half brain was homogenized in ice-cold NE1 buffer [20 mm Hepes pH 7.9, 10 mm KCl, 1 mm MgCl2, 0.1% Triton X-100, 20% glycerol, 0.5 mm DTT, protease inhibitor (complete EDTA free cocktail, Roche)] before adding 750 units of benzonase for 15 min at room temperature then an equal volume of 2× SDS loading buffer (0.125 M Tris pH 6.8, 20% glycerol, 4% SDS, 0.25% bromophenol blue, 20 mm DTT, 0.3 M β-mercaptoethanol). Samples were boiled for 3 min before loading equal volumes on a 4–12% Run Blue SDS precast gel (Expedeon). Gels were transferred to a 0.2-μm nitrocellulose membrane (Bio-Rad) and then blocked for 1 h (5% milk, 1× TBS, 0.1% Tween) before applying anti-Mecp2 1:1000 (Sigma M6818) or anti-γ-tubulin 1:3000 (Sigma T5326) overnight at 4°C, followed by IRDye 800CW donkey anti-mouse IgG 1:10 000 (LiCor) for 2 h at RT after washing. Membranes were imaged using the Odyssey Infrared Imager (LiCor) and quantified using Image Studio Lite Software (LiCor).
+ Open protocol
+ Expand
7

Purification of Ig from Infected Mouse Tails

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tail skins from infected mice were excised and crushed with metallic beads and a TissueRuptor (QIAGEN) in an equal volume of PBS supplemented with proteases inhibitor (cOmplete EDTA-free cocktail, Roche) and protein A/G IgG Binding Buffer (Thermo Fisher Scientific). The resulting suspensions were centrifuged at 8000g for 45 min at 4°C. Ig were then purified with a NAb protein A/G spin column (Thermo Fisher Scientific), followed by a NAb protein L spin column (Thermo Fisher Scientific), according to the manufacturer’s instructions.
+ Open protocol
+ Expand
8

Co-immunoprecipitation of Vif Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK 293T cells were co-transfected with pA3G-HA and plasmids expressing wild type or mutant Vif, Twenty-four h post-transfection, cells were washed in PBS (140 mM NaCl, 8 mM NaH2PO4, 2 mM Na2HPO4) and lysed in RIPA 1X (PBS, 1% NP40, 0.5% sodium deoxycholate, 0.05% SDS) supplemented with protease inhibitors (cOmplete EDTA Free cocktail, Roche). After centrifugation, an aliquot fraction (50 μl) was used for determination of the protein expression level, and the remaining was incubated 2 h at 4 °C with 1 μg of HA antibody (Santa Cruz, California, USA) on a rotating wheel. After equilibration, protein A Dynabeads (Life Technologies) were added and incubated for 1.5 h at 4 °C. Beads were washed 5 times with cold RIPA, and eluted in glycine pH 2.8, NuPAGE LDS sample buffer (Life Technologies). After 10 min at 70 °C, supernatant was loaded on NuPAGE gel (Life Technologies) and analyzed by western blot.
+ Open protocol
+ Expand
9

Cytosolic and Mitochondrial Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
To prepare cytosolic and mitochondrial lysates, BMDM cells were homogenized and mitochondria were pelleted by a mitochondria isolation kit (Thermo Fisher Scientific, Rockford, IL, USA). The cytosolic fractions were subjected to Co-IP with anti-Bax or anti-SARM antibody. The mitochondrial fraction products were immunoblotted and probed sequentially with antibodies to Bax, SARM and VDAC. For Co-IP study with J774 or RAW264.7 total cell lysates, the cells were lysed in CHAPS lysis buffer containing 20 mM Tris-HCl, pH 7.5, 5 mM MgCl2, 137 mM KCl, 1 mM EDTA, 1 mM EGTA, 1% CHAPS and 1 × protease inhibitors (complete EDTA-free cocktail, Roche). Then, the cell lysate was precleared by incubating with protein G Sepharose (GE Healthcare, Little Chalfont, UK) at 4 °C for 2 h. The supernatant was incubated overnight at 4 °C with Bax or SARM or Bcl-2 antibody, followed by a 3-h incubation with protein G Sepharose. The washed immunoprecipitates, resuspended in Laemmli buffer, was boiled at 95 °C for 5 min before immunodetection of SAG, Bax, SARM, Bcl-2 or ubiquitin.
+ Open protocol
+ Expand
10

Immunoprecipitation from Yeast Cell Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lysates for immunoprecipitations were prepared from indicated strains in mid-logarithmic growth grown in YPD reach media. Cells were harvested, washed in distilled water, and resuspended in lysis buffer (50 mM Tris HCl pH 7, 150 mM NaCl) supplemented with protease inhibitors (Complete EDTA-free cocktail; Roche) and frozen in a drop-by-drop fashion in liquid nitrogen. Frozen cells were then pulverized in a ball mill (1 min at 30 Hz; Retsch), thawed with nutation. Samples were thawed in 1ml lysis buffer supplemented with protease inhibitors and 1% CHAPS (Sigma Aldrich) at 4°C for 1 hour. All samples were then clarified by centrifugation at 14000 × g at 4°C for 15 minutes. The remaining supernatant was added to GFP-trap (Chromotek) for 1 hour followed by centrifugation at 1000 × g at 4°C for 3 minutes, and the supernatant was set aside as the flow through. Beads were washed three times with lysis buffer supplemented with protease inhibitors, and bound proteins were released from the beads by a 5 minute incubation in 95°C in sample buffer. The total protein lysate, the flow through and the immunoprecipitation (IP) fraction were analyzed by western blot.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!