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20 protocols using limulus amebocyte lysate kit

1

Isolation and Characterization of UHMWPE Particles

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Conventional ultrahigh-molecular-weight PE particles (a gift from Dr. Timothy Wright Hospital for Special Surgery, New York) were obtained from joint simulator tests and isolated according to an established density centrifugation protocol. Frozen aliquots of the serum containing particles were lyophilized for 4–7 days. The dried material was digested in 5 M sodium hydroxide at 60°C for 1 h, followed by ultrasonication for 10 min. The digested particle suspension was centrifuged through a 5% sucrose gradient at 40k rpm (285k ×g at rmax) at 10°C for 3 h. The collected particles at the surface of the sucrose solution were incubated at 80°C for 1 h and ultrasonicated, and centrifuged again through an isopropanol gradient (0.96 and 0.90 g/cm3) at 40k rpm at 10°C for 1 h. The purified particles at the interface between the two layers of isopropanol were harvested, and the isopropanol was evaporated from the particle mixture then lyophilized until dry. Particles were then re-suspended in 95% ethanol, which was evaporated completely. The particles tested negative for endotoxin by means of a Limulus Amebocyte Lysate (LAL) Kit (Lonza, Allendale, NJ). The mean diameter of the particles was 1.0 ± 0.1 μm (mean ± standard error, averaged from 125 scanned particles) measured by electron microscopy.
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2

Extraction and Fractionation of Immunostimulatory Polysaccharide from Caulerpa fragile

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CFP was prepared as previously described [16 (link)]. Briefly, a dried and milled C. fragile sample was treated with 90% ethanol at room temperature overnight. After the removal of ethanol, the sample was extracted with distilled water at 65 °C for 2 h. The water-soluble crude sample was precipitated with ethanol and filtrated. This was re-suspended in distilled water, and free proteins were removed using the Sevag method. The solution was fractionated by an ion-exchange chromatography with a DEAE Sepharose fast flow column (17-0709-01, GE Healthcare Bio-Science AB, Uppsala, Sweden). Chromatographic separation resulted in three fractions (F1, F2, and F3). The most immunostimulatory polysaccharide, fraction F2, was chosen for further study and designated as CFP [16 (link)]. The endotoxin levels in CFP were measured using a Limulus amebocyte lysate (LAL) kit (Lonza, Basel, Switzerland). Fucoidan was obtained from Sigma-Aldrich (St Louis, MO, USA).
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3

Isolation and Characterization of Immunostimulatory Polysaccharide from Codium fragile

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The polysaccharide from C. fragile was prepared as previously described.12 Briefly, dried and milled C. fragile sample was treated with 90% ethanol at room temperature overnight. After removing the ethanol, the sample was extracted using distilled water at 65°C for 2 h. The water-soluble crude sample was precipitated in ethanol and subjected to filtration. The crude sample was re-dissolved in distilled water, and free proteins were removed using the Sevag method. The crude sample was fractionated using an ion-exchange chromatography system equipped with a DEAE Sepharose fast flow column (17–0709-01, GE Healthcare Bio-Science AB, Uppsala, Sweden). Chromatographic separation resulted in three fractions (F1, F2, and F3). The most immunostimulatory polysaccharide, fraction F2, was chosen for further study and designated as CFP. The endotoxin levels in CFP were measured using a Limulus amebocyte lysate (LAL) kit (Lonza, Basel, Switzerland). The CFP and OVA used in all experiments contained less than 0.05 endotoxin unit/mL. Escherichia Coli (E. coli) O111:B4 LPS was purchased from Sigma-Aldrich (St. Louis, Missouri, US; #L4130).
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4

Plasma Biomarker Measurement Protocol

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Plasma insulin was measured using the Ultra-Sensitive Mouse Insulin ELISA Kit (Chrystal Chem, Downers Grove, IL, USA). Plasma cytokine levels were determined using MSD technology (Meso Scale Discovery, Gaithersburg, MD, USA). Plasma adiponectin levels were measured with an ELISA kit (Axxora, San Diego, CA, USA). LPS was measured in blood plasma by using the Limulus Amebocyte Lysate (LAL) Kit (Lonza, Visp, Switzerland) following the manufacturer’s instructions. Endotoxin levels are expressed as arbitrary units.
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5

PMMA Particle Preparation and Curcumin Dissolution

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Commercially available PMMA particles (Polysciences) with a mean diameter of 4.8 μm (0.1–16) were used in this study as described previously [19 (link)]. Ninety percent of the particles were <10 μm in diameter. Adherent endotoxin in particles was removed by sterilization in 70% ethanol for 48 h and washing with sterile phosphate-buffered saline (PBS) thrice. The absence of endotoxin in PMMA particles was confirmed using a Limulus Amebocyte Lysate Kit (BioWhittaker, Walkersville, MD) at a detection level of <0.05 EU/ml. The PMMA particles were then suspended in sterile PBS at a concentration of 1 mg/ml. CUR with ≥98% purity was obtained from Aladdin Industrial Incorporation (Ontario, CA, USA). A total of 1 mg CUR was dissolved in 0.5 ml dimethyl sulfoxide (DMSO) at a concentration of 2 mg/ml and stored at −20°C until needed.
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6

Wear Particle Isolation and Implant Preparation

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Conventional UHMWPE particles were a generous gift from Dr. Timothy Wright, Hospital for Special Surgery. Particles were isolated from knee joint simulator test supernatants according to established protocols.14 (link) Following isolation particles were washed twice in ethanol (96%, 70%) and, after evaporation of ethanol, suspended in PBS for storage in −80°C. The particles tested negative for endotoxin using a Limulus Amebocyte Lysate Kit (BioWhittaker, Walkersville, MD). The mean diameter of the particles was 0.48 ± 0.10 μm as measured by electron microscopy. Alzet model 2006 (Durect Corporation, Cupertino, CA) osmotic pumps were loaded either with carrier solution (1% BSA-PBS); carrier solution with 15 mg mL−1 UHMWPE particles; or carrier solution with UHMWPE particles and 10 μg mL−1 mouse recombinant IL-4 (R&D Systems, Minneapolis, MN). 6-cm-long vinyl tubing (Durect Corporation), prefilled with the appropriate solution, was used to connect the pumps to the coated or noncoated titanium rods.22 (link)
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7

Isolation and Characterization of UHMWPE Particles

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Conventional UHMWPE particles were a gift from Dr Timothy Wright (Hospital for Special Surgery, New York) and obtained from knee joint simulator tests and isolated according to an established protocol [18 (link)]. Frozen aliquots of the particles containing serum were lyophilized for 4-7 days. The dried material was digested in 5 M sodium hydroxide at 60 °C for 1h, and ultrasonicated for 10 min. The digested particle suspension was centrifuged through a 5% sucrose gradient at 40 K rpm at 10 °C for 3 h. The collected particles at the surface of the sucrose solution were incubated at 80 °C for 1 h and centrifuged again through an isopropanol gradient (0.96 and 0.90 g/cm3) at 40K rpm at 10 °C for 1 h. The purified particles at the interface between the two layers of isopropanol were harvested and the isopropanol was evaporated from the particle mixture then lyophilized until dry. Particles were then re-suspended in 95% ethanol which was evaporated completely. The particles tested negative for endotoxin using a Limulus Amebocyte Lysate Kit (BioWhittaker, Walkersville, MD). The mean diameter of the particles was 1.0 ± 0.1 μm (mean ± SE, averaged from 125 scanned particles) measured by electron microscopy. The measurement was done by Dr. Lydia-Marie Joubert in the Cell Science Image Facility at Stanford University.
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8

LPS Isolation and Characterization

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Isolation of A-LPS from the ΔporV mutant and W83 strain was performed according to a previously described procedure (10 (link)). For affinity chromatography, ion-exchange chromatography, and size exclusion chromatography, HiTrap ConA 4B, HiPrep DEAE FF 16/10, and Superdex200 Increase 10/300 GL columns, respectively, were used. All columns were purchased from GE Healthcare Life Sciences. Isolation of total LPS from HG66, Δpg0129, and Δpg1142 strains was carried out using an LPS extraction kit (Intron Biotechnology). E. coli LPS was purchased from Sigma. The concentration of LPS was determined using a Limulus amebocyte lysate kit (Lonza) and shown in endotoxin units (EU/ml) calculated based on a standard curve.
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9

Titanium Particle Characterization and Preparation

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Pure Ti particles were purchased from Johnson Matthey chemicals (catalog #00681, Ward Hill, Massachusetts, USA; Fig. 1). Ninety percent of the Ti particles were <3.6 μm in diameter, 75% were <2.4 μm, 50% were <1.6 μm, 25% were <1.2 μm, and 10% were <1.0 μm. Ti particles were prepared as previously described, and the particles tested negative for endotoxin using a Limulus Amebocyte Lysate Kit (BioWhittaker, Walkersville, MD) as described previously23 (link)24 (link). Sterile particles were suspended in phosphate buffered saline (PBS) and stored at 4 oC before use.
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10

DNA Extraction and Endotoxin Removal

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DNA was extracted from PAK strain using QIAGEN Genomic-tip 500 (Qiagen, Courtaboeuf, France). To remove contaminating lipopolysaccharide (LPS), the DNA was passed through a Detoxi-Gel Endotoxin Removing Resin (Thermo Scientific, Rockford, USA), resulting in DNA preparations with low level of LPS (<1 pg/µg DNA). LPS levels were measured using the Limulus amebocyte lysate kit (Lonza, Basel, Switzerland). The P.a. DNA was used at 25 µg/ml. The genomic DNA was extracted from lung and used at 25 µg/ml as a control.
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