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Nbt bcip chromogenic substrate

Manufactured by Roche

NBT/BCIP chromogenic substrate is a laboratory reagent used in various biochemical and immunological assays to detect and visualize the presence of specific enzymes or molecules. It functions as a chromogenic substrate, undergoing a color change reaction when catalyzed by the target enzyme, enabling the identification and localization of the analyte.

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5 protocols using nbt bcip chromogenic substrate

1

In Situ Hybridization of Serpina3n in Mouse DRG

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For rat DRG, in situ hybridization was performed on 10 μm cryosections of the L4 dorsal root ganglia using digoxigenin-labeled antisense riboprobes, as previously described30,38.
In situ hybridization was performed on mouse DRG sections as follows. DRGs L4–L5 were harvested from WT and Serpina3n−/− mice 1 day post-SNI, cryosectioned (10 μm), mounted on Superfrost Plus slides (VWR) and frozen at −80°C until use. A digoxigenin-labeled anti-sense cRNA probe against the floxed exon of Serpina3n was generated by a T7 (Roche) in vitro transcription reaction using a Serpina3n cDNA (5′:ACTGCAGAACACAGAAGATGGCCT3′:TCACCAGCACCATCAATGTCCTTTT). In situ hybridization was performed as previously described39. Following ON hybridization, slides were incubated with Alkaline phosphatase conjugated anti-digoxigenin antibody (Roche, 1:200) for 1 h at RT. After several washes in PBST, slides were incubated in NBT/BCIP chromogenic substrate (Roche) according to manufacturer’s specifications for 5 h. Slides were coverslipped and brightfield images were captured on a Nikon 80i Upright Microscope.
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2

In Situ Hybridization of Serpina3n in Mouse DRG

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For rat DRG, in situ hybridization was performed on 10 μm cryosections of the L4 dorsal root ganglia using digoxigenin-labeled antisense riboprobes, as previously described30,38.
In situ hybridization was performed on mouse DRG sections as follows. DRGs L4–L5 were harvested from WT and Serpina3n−/− mice 1 day post-SNI, cryosectioned (10 μm), mounted on Superfrost Plus slides (VWR) and frozen at −80°C until use. A digoxigenin-labeled anti-sense cRNA probe against the floxed exon of Serpina3n was generated by a T7 (Roche) in vitro transcription reaction using a Serpina3n cDNA (5′:ACTGCAGAACACAGAAGATGGCCT3′:TCACCAGCACCATCAATGTCCTTTT). In situ hybridization was performed as previously described39. Following ON hybridization, slides were incubated with Alkaline phosphatase conjugated anti-digoxigenin antibody (Roche, 1:200) for 1 h at RT. After several washes in PBST, slides were incubated in NBT/BCIP chromogenic substrate (Roche) according to manufacturer’s specifications for 5 h. Slides were coverslipped and brightfield images were captured on a Nikon 80i Upright Microscope.
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3

Automated Whole-Mount In Situ Hybridization

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cDNAs were amplified by PCR from pCMV-Sport6 plasmids picked from our cDNA library using SP6 and T7 primers and digoxygenin-riboprobes were synthesized from PCR templates. A protocol for automated whole-mount in situ hybridization (Intavis) was performed. Briefly, embryos were progressively rehydrated, permeabilized by proteinase K (Sigma) treatment before being incubated overnight at 68 °C in hybridization buffer containing the appropriate shisa2 probe. After stringent washes, the hybridized probes were detected by immunohistochemistry using an alkaline phosphatase-conjugated antibody against digoxygenin (Roche) and a NBT/BCIP chromogenic substrate (Roche).
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4

Whole-mount in situ Hybridization Protocol

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cDNAs were amplified by PCR from pCMV-Sport6 plasmids picked from our cDNA library [28 (link)] and digoxygenin-labeled riboprobes were synthesised from PCR templates. A protocol for automated whole-mount in situ hybridization (Intavis) was performed. Briefly, embryos were progressively re-hydrated, permeabilized by proteinase K (Sigma) treatment before being incubated over night at 68° in hybridization buffer containing the appropriate probe. After stringent washes, the hybridized probes were detected by immunohistochemistry using an alkaline phosphatase-conjugated antibody against digoxygenin (Roche) and a NBT/BCIP chromogenic substrate (Roche). After staining, embryos were photographed in toto, always in the same orientation, under a Nikon AZ100 stereomicroscope using agarose wells.
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5

In Situ Hybridization Probe Synthesis

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To prepare in situ hybridization probes, DNA templates were obtained by linearization of plasmids containing atoh7 and ccnd1 cDNAs using the EcoRI and NotI restriction enzymes, respectively. RNA probes were synthesised by in vitro transcription. Appropriate polymerases (T7, T3; Promega) and digoxigenin-labelled nucleotides (Roche) were used for the synthesis of antisense RNAs according to manufacturer's instructions. Synthesized probes were purified using RNAeasy kit (Qiagen). Embryos were fixed and processed as previously described (Thisse and Thisse, 2008) and hybridization signals were detected using anti-digoxigenin-AP antibody (1:4000; 11093274910, Roche) and the NBT/BCIP chromogenic substrate (1:3.5; Roche). After the procedure, embryos were fixed and stored at 4°C until imaging
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