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54 protocols using anti cd45 fitc

1

Multicolor Flow Cytometry Immunophenotyping

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All steps were performed with cold reagents and cells were kept on ice at all times. Cells were suspended in FACS buffer (Cell Staining Buffer, BioLegend) blocked with Human Fc block for 10 minutes prior to addition of antibodies for IL-20RA, IL-22RA (Abcam), IL-20RB (eBioscience), or species-appropriate isotype control antibodies at 10 μg/mL. Secondary and conjugate antibodies were added at concentrations according to manufacturer instructions: Brilliant Violent 421-anti-Rabbit, PE-anti-Rat, Alexa Fluor 647-anti-CD66b, FITC-anti-CD45 (BioLegend). Cell viability was determined by Zombie NIR Fixable Viability Kit (BioLegend) according to manufacturer instructions. Labeled cells were kept on ice and acquired on the flow cytometer (LSRFortessa, BD Biosciences) immediately. Analysis was performed with FlowJo software, cells were gated on singlets, and dead cells were excluded before gating on target populations.
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2

Immune Profiling of Tumor-Draining Lymph Nodes

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Tumors and cervical lymph nodes harvested from mice were collected and homogenized into the single-cell suspensions. Then, the cells were blocked with anti-CD16/32 (BioLegend, catalog no. 101302) antibodies to avoid nonspecific adsorption and stained with the following antibodies according to the manufacturer’s instructions: fluorescein isothiocyanate (FITC)–anti-CD45 (BioLegend, catalog no. 147710), Peridinin-Chlorophyll-Protein Complex (PerCP)-CD11c (BioLegend, catalog no. 117326), allophycocyanin (APC)–anti-CD80 (BioLegend, catalog no. 104714), phycoerythrin (PE)–anti-CD86 (BioLegend, catalog no. 105106), PerCP–anti-CD3 (BioLegend, catalog no. 100326), APC–anti-CD4 (BioLegend, catalog no. 100412), PE–anti-CD8 (BioLegend, catalog no. 100708), and FITC–anti-Ki67 (BioLegend, catalog no. 151212). A total of 1.0 × 105 events in the ungated flow chart in each sample were collected using a C6 plus flow cytometer and analyzed by FlowJo software (Ver. 10.0.7). The gating strategy is given in fig. S23.
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3

HMGB1 Quantification and Localization

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HMGB1 concentration was determined from the supernatant of packed RBC via ELISA (Shino-test; Tokyo, Japan). Flow cytometry was performed prior to centrifugation from blood pooled from 3 random samples for FACS analysis of HMGB1 following permeabilization (identified using PE conjugated human anti-HMGB1, 2.5ug/ml (Biolegend, San Diego, CA) expression on leukocytes (identified using FITC anti-CD45, 1ug/ml (Biolegend, San Diego, CA) and RBCs (identified using FITC human anti-235b, 2.5ug/ml (Biolegend, San Diego, CA)). Flow cytometry was performed using a FACSCanto flow cytometer using DIVA software (BD Biosciences).
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4

Microglia Activation and Cytokine Profiling

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Morphine sulfate was purchased from West-Ward (Eatontown, NJ, USA). PLX5622-containing rodent diet (each kilogram contains 1200 mg PLX5622) was purchased from Research Diets (New Brunswick, NJ, USA). Diphtheria toxin (DT) from Sigma; HibernateA and HibernateA-Ca from BrainBits (Springfield, IL, USA); papain from Worthington Biochemical (Lakewood, NJ, USA); Optiprep Density Gradient Medium from Sigma (St. Louis, MO, USA). Antibodies used for immunoblotting were: anti-IBa1 (1:1000, Wako: 016–20001); anti-GFAP (1:1000, Millipore: MAB360); anti-IL-1β (1:500, Novus Biologicals: NB600–633) and anti-β-actin (1:1000, Santa Cruz Biotechnology: sc-1616-R). The antibody for immunohistochemistry was anti-IBa1 (1:200, Wako: 016–20001). Antibodies used for flow cytometry were: APC-anti-CD11b (Biolegend: 101211), FITC-anti-CD45 (Biolegend: 103107) and anti-CD16/32 (Biolegend: 101302).
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5

Kidney tissue immunophenotyping protocol

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After the kidney tissue was dissociated by Liberase TM (Roche) in RPMI-1640 medium at 37°C for 20 minutes, 100 μL of the single-cell suspensions was incubated with the corresponding antibodies at room temperature for 30 minutes in the dark. The following antibodies were purchased from BioLegend: FITC anti-CD45 (catalog 103108), APC/Cyanine7 anti-CD11b (catalog 101226), PE/Cyanine7 anti-F4/80 (catalog 123114), and APC anti-Ly6c2 (catalog 128016). PE anti-Arg-1 (catalog IC5868P) was purchased from R&D Systems. The data were analyzed by using Kaluza.
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6

Flow Cytometric Analysis of MSC and T-Cell Markers

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The stem cell surface markers of the MSCs were administered using flow cytometry, which was stained with a Fixable Viability Kit (Biolegend, San Diego, CA) and Mouse MSC Analysis Kit (Cyagen, Santa Clara, CA) for 30 min according to the instructions. The CFSE-labeled MSCs were harvested on the 2nd three-day cultivation and detected by flow cytometry, with additional staining using the Fixable Viability Kit. The spleen and kidney single-cell suspensions from experimental mice were first stained via fluorophore-conjugated antibodies, including BV510 Fixable Viability Kit (Biolegend, San Diego, CA), FITC anti-CD45 (Biolegend, San Diego, CA), PerCP/Cy5.5 anti-CD4 (Biolegend, San Diego, CA), APC anti-CD25 (Biolegend, San Diego, CA) for 30 min at 4 °C, follow by PE anti-Foxp3 (Biolegend, San Diego, CA), and PE/Cy7 anti-mTOR (Invitrogen, Carlsbad, CA) for 2 h at 4 °C. The CD4+T cells cultured in vitro were stained via BV510 Fixable Viability Kit, PerCP/Cy5.5 anti-CD4, and APC anti-CD25 antibodies for 30 min at 4 °C. The CD4+CD25+CD127Tregs sorted by fluorescence activated cell sorting (FACS) were stained via BV510 Fixable Viability Kit, PerCP/Cy5.5 anti-CD4, APC anti-CD25, and PE anti-CD127 (Biolegend, San Diego, CA) antibodies for 30 min at 4 °C.
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7

Isolation and Characterization of Huc Cells

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The blood vessels in the Huc tissue were removed using a scalpel under a stereomicroscope, and tissues were washed with PBS, cut into 1 mm3 blocks and digested with diluted trypsin (PBS mixed with trypsin; 1:1) overnight at 4°C. Tissue in the Petri dish was transferred to a 50 ml Eppendorf tube and placed in a 37°C water bath for 15 min. DMEM with 20% FBS was added to the Petri dish and cultured in an incubator for 15 min at 37°C and 5% CO2. The cells were incubated with the following antibodies: Isothiocyanate (FITC) anti-CD34 (1:100; cat. no. 343604; BioLegend, Inc.), FITC anti-CD44 and FITC anti-CD45 (1:100; cat. nos. ab46793 and ab134199, respectively; both purchased from Abcam) at room temperature in the dark for 10 min and detected using a NovoCyte™ flow cytometer (NovoCyte 2060R; ACEA Bioscience, Inc; Agilent).
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8

Isolation and Identification of Neutrophils from BALF

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BALF was centrifuged at 300g for 5 min and 4 ℃. The supernatant was stored at -80 °C. Neutrophils were identified as CD45+Ly6G+CD11b+ when the cell sediments were resuspended in PBS and stained with FITC-anti-CD45, PerCP/Cyanine5.5-Ly6G, and APC/Cyanine7-CD11b (BioLegend, San Diego, CA, USA) 27 (link). Total cells in the BALF were counted using a hemocytometer.
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9

Ectopic Tissue Characterization by Flow Cytometry

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Ectopic tissue masses were harvested on day 5 from mice implanted with Matrigel alone and Matrigel/rhBMP2 mixture. The latter were sub-divided into two groups each systemically treated with preimmune antibody or Act A antibody as above. Samples were dispersed into single cell populations by dispase treatment for 1 hr, and cells were stained with fluorescent conjugated antibodies, including FITC anti-CD45 (Biolegend, 103107) and Brilliant Violet 421 anti-CD34 antibodies (BD Biosciences, 562608) for 60 minutes at 4°C. Cells washed in flow buffer (2% FBS in PBS) and analyzed on a BD Biosciences LSR II flow cytometer.
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10

Multi-Parametric Flow Cytometry Panel

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Cells were resuspended in 100 μl FCB, blocked with 0.5 μl TruStainFcX (anti-mouse CD16/32 FcR block, Biolegend) for 5 min at room temperature, and stained for 30 min at 4 °C with: FITC-anti-CD45 (1:1000, Biolegend), PE-Cy7-anti-CD4 (1:200, eBioscience), PerCP-Cy5.5-anti-CD8 (1:200, Biolegend), PE-anti-B220 (1:200, Biolegend), APC-anti-MHCII (1:200, eBioscience), and APC-eFluor780-anti-CD11b (1:200, eBioscience) (Supplemental Table 1). Cells were then fixed in 1% PFA for 1 h. Finally, cells were resuspended in 500 μl FCB, labelled with DAPI to exclude cell debris, and analyzed with a CytoFLEX S flow cytometer (Beckman-Coulter) equipped with the CytExpert software (Beckman-Coulter).
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