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Triple tof 5600 spectrometer

Manufactured by AB Sciex
Sourced in United States

The Triple TOF 5600 spectrometer is a high-resolution mass spectrometer designed for advanced analytical applications. It combines a triple quadrupole architecture with a time-of-flight (TOF) mass analyzer, providing high-throughput quantitation and accurate mass measurement capabilities.

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16 protocols using triple tof 5600 spectrometer

1

Chemical Characterization of Compounds

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All reagents and solvents were obtained from commercial suppliers and used without further purification unless specified. The reactions were monitored by analytical thin-layer chromatography on Silica Gel aluminium sheets and visualised with a UV lamp. Melting points were determined with an XT-4 micromelting point apparatus and are uncorrected. The NMR spectra were recorded on a Bruker ACF-600 spectrometer using the tetramethylsilane (TMS) as internal standard. High resolution mass spectra (HRMS) were taken on a Triple TOF 5600 spectrometer (AB Sciex).
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2

Spectroscopic Characterization of Compounds

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Melting points were measured with a WRS-1B capillary melting point apparatus. Optical rotations were obtained with a Rudolf Autopol IV at 22 °C. UV and IR spectra were recorded on a Hitachi U-2900E UV spectrophotometer and a Thermo Scientific Nicolet Is5 FT-IR spectrometer, respectively. ECD spectra were recorded on a JASCO-810 spectropolarimeter. ESI-MS and HRESIMS were acquired on an Agilent 1100 LC/MSD mass spectrometer and an AB Sciex Triple TOF 5600 spectrometer, respectively. X-ray crystallographic data were measured on a Bruker Apex Duo Diffractometer (Ga Kα). 1D and 2D NMR spectra were performed on a Bruker Avance III 400 MHz or a Bruker Avance III 600 MHz spectrometers using the residual solvent signals as the internal standard. All chemical shifts were expressed in ppm. Semi-preparative HPLC was performed on a Waters e2695 system coupled with a 2998 photodiode array (PDA) detector and a 2424 evaporative light-scattering detector (ELSD). A SunFire C18 column (5 μM, 10 × 250 mm; flow rate: 3.0 mL min−1) and a X-bridge C18 column (5 μM, 10 × 250 mm; flow rate: 3.0 mL min−1) were utilized. Thin-layer chromatography (TLC) was performed on pre-coated plates (GF254, 0.25 mm, Kang-Bi-Nuo Silysia Chemical Ltd., Yantai, China). TLC spots were visualized under UV light (254 or 365 nm) and by spraying with 5% H2SO4/vanillin followed by heating to 120 °C.
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3

Characterization of Cu(II) Complexes

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All reagents and solvents used were obtained from commercial sources (Merck) and used as received. Elemental analyses were performed with a Perkin Elmer/Series II 2400 analyzer. Melting point was determined using the Micro Chemistry MQAPF-302 digital instrument. For comparison purposes, a flame atomic absorption spectrometer (AAS), Model PSD 120, operating with an acetylene/air flame, was used to determine the Cu(II) content in each complex. The lamp used was of the multi-element type Co/Cr/Cu/Fe/Mn/Ni, and each complex sample was made at a concentration of 3 mg L−1. Infrared spectra in ATR were recorded from KBr pellets (4,000–400 cm−1) using FT-IR Varian 640. A UV-Vis-NIR Varian Cary 5000 spectrophotometer was used, and the concentration used for all analyses was 2 × 10−5 M in methanol (MeOH) and N, N-dimethylformamide (DMF). 1H NMR and 13C NMR analyses were conducted using an NMR YH 600 Oxford. The ESI-MS and ESI-MS/MS spectra were obtained from AB Sciex TripleTOF 5600+ spectrometer equipment in positive mode, 5,500 V, and 200°C. Electrospray ionization mass spectrometry (ESI-MS) analysis was performed on an AB Sciex Triple TOF 5600+ mass spectrometer in positive mode, with a voltage of 5500 V and source temperature of 200°C.
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4

Quantitative Analysis of Anthraquinones

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Young- and mature-stage seed samples were extracted with methanol using sonication for 30 min at 60°C. After extraction, the samples were centrifuged at 12,000 rpm for 3 min at 25°C, and the supernatant was filtered with 0.2-μm Acrodisc MS Syringe Filters with a WWPTFE membrane (Pall Corporation, Port Washington, NY, United States). A quantitative analysis of the anthraquinones was performed using a Triple TOF 5600 + spectrometer with a DuoSpray ion source (AB Sciex, Framingham, MA, United States) coupled with a Nexera X2 UHPLC (Shimadzu, Kyoto, Japan) equipped with a binary solvent manager, a sample manager, a column heater, and a photodiode array detector. UHPLC was performed on an ACQUITY UPLC BEH C18 column (1.7 μm, 2.1 × 100 mm, Waters Corporation, Milford, MA, United States). The mobile phases consisted of 5 mM ammonium acetate in water (eluent A) and 100% acetonitrile (eluent B). The gradient profile was as follows: 0–1 min, 20% eluent B; 1–3.5 min, 20–30% eluent B; 3.5–8 min, 30–50% eluent B; 8–12 min, 50–100% eluent B; and 11–17 min, 100% eluent B. The flow rate was 0.5 mL/min. A total of 5 μL of each sample was injected. To detect the peaks from the test samples, the following MS parameters in ESI-negative mode were used: nebulizing gas, 50 psi; heating gas, 50 psi; curtain gas, 25 psi; desolation temperature, 500°C; and ion spray voltage floating, 4.5 kV.
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5

Quantitative Analysis of Anthraquinones in Seed Samples

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Early- and late-stage of seed samples were extracted with methanol using sonication for 30 min at 60°C. After extraction, samples were centrifuged at 12,000 rpm for 3 min at 25°C and the supernatant was filtered with 0.2 μm Acrodisc® MS Syringe Filters with WWPTFE membrane (Pall Corporation, Port Washington, NY, USA). Quantitative analysis of anthraquinones was performed by a Triple TOF 5600+ Spectrometer with a DuoSpray ion source (AB Sciex, Ontario, CA, USA) coupled with a Nexera X2 UHPLC (Shimadzu, Kyoto, Japan) equipped with binary solvent manager, sample manager, column heater, and photodiode array detector. UHPLC was performed on a ACQUITY UPLC®BEH C18 column (1.7 μm, 2.1 x 100 mm, Waters Corporation, Milford, USA) and mobile phases consisted of 5 mM ammonium acetate in water (eluent A) and 100% acetonitrile (eluent B). The gradient profile was as follows: 0–1 min, 20% B; 1–3.5 min, 10–30% B; 3.5–8 min, 30–50% B; 8–12 min, 50–100% B; 11–17 min, 100% B. The flow rate was 0.5 mL/min and five microliters of samples were injected. For detecting peaks from test samples, MS parameter in ESI-negative mode was used as follows: nebulizing gas, 50 psi; heating gas, 50 psi; curtain gas, 25 psi; desolvation temperature, 500°C; ion spray voltage floating, 4.5 kV.
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6

Purification and Characterization of Organic Compounds

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All chemical reagents and solvents used in the experiment were purchased from commercial suppliers and used without further purification. Reactions were monitored by thin-layer chromatography (TLC) on silica gel GF254 (Qingdao Haiyang Chemical Plant, Qingdao, China), and then visualized with a UV lamp (254 nm). Column chromatography was performed using silica gel (100–200 mesh; Qingdao Haiyang Chemical Plant, Qingdao, China). Melting points were measured on an XT-4 micromelting point apparatus and uncorrected. 1H NMR spectra (600 MHz) and 13C NMR spectra (151 MHz) were recorded on a Bruker ACF-600 spectrometer at 25°C using the TMS as internal standard and CDCl3 or DMSO-d6 as the solvent. The purity of these compounds was determined by analytical high performance liquid chromatography (HPLC) performed on a Waters ACQUITY Arc HPLC system equipped with a 2998 PDA detector (Column: Agilent XDB-C18, 5 mm particle size, 4.6 mm×250 mm; mobile phase: A=CH3OH, B=H2O (0.1% acetic acid); isocratic elution, A = 80%, B = 20%; flow rate = 1 mL/min; λ=254 nm; 10μL injection). High-resolution mass spectra were conducted on an AB Sciex Triple TOF 5600 spectrometer (HR-ESI-MS) and the error analysis of the HRMS results was summarized in Table S1 (Table S1 in the Supporting Information).
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7

Synthesis and Characterization of [HPy][AuCl4]

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Reagents and solvents employed were obtained from commercial sources and used as received (Merck, Brazil). The UV–Vis spectra were recorded using the Varian-Cary spectrophotometer (Agilent Technologies, CA, USA) with solutions produced in methanol with a concentration of 2 × 10−5 M. The Perkin Elmer/Series II 2400 (Perkin Elmer, Shelton, USA) analyzer was used to evaluate the elemental analysis of the studied substances. The infrared spectra were obtained with the aid of KBr (4000–400 cm−1) using the FTIR Varian 640 equipment (Agilent Technologies, CA, USA). The ESI-MS and ESI-MS/MS spectra were obtained by the AB Sciex TripleTOF 5600+ spectrometer in mode positive, 5500 V and 200 °C, with solutions at a concentration of 50 µM (methanol/dimethylformamide, ratio 99/1%) and 0.1% acetic acid (SCIEX, Framingham, USA). [HPy][AuCl4] was prepared according to the known literature [45 (link)].
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8

Synthesis of Substituted Pyrazolones

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Reactions were carried
out in 5 mL
vials under air. Commercial reagents were used as purchased. Reactions
were monitored by TLC analysis using Merck Silica Gel 60 F-254 thin
layer plates. Flash column chromatography was performed on Merck silica
gel 60, 0.040–0.063 mm, and visualized using both a UV lamp
(254 nm) and then a CAM solution (an aqueous solution of ceric ammonium
molybdate). Melting points were determined in capillary tubes. NMR
spectra were run at 300 MHz for 1H and 75 MHz for 13C using residual nondeuterated solvent as internal standard
(CHCl3, δ 7.26 and 77.00 ppm, respectively; MeOH,
δ 3.34 ppm and δ 49.87 ppm, respectively). Chemical shifts
are given in ppm. The carbon type was determined by DEPT experiments.
High-resolution mass spectra (ESI) were recorded on a TripleTOF 5600
spectrometer (AB Sciex, Warrington, U.K.) equipped with an electrospray
source with a capillary voltage of 4.5 kV (ESI). Specific optical
rotations were measured using sodium light (D line 589 nm). Chiral
HPLC analyses were performed in a chromatograph equipped with a UV
diode-array detector using columns with chiral stationary phases from
Daicel. 2,2,2-Trifluoroacetophenones 2 used were commercial
and alkylidenpyrazolones 1 were prepared following a
reported procedure.23 (link)
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9

Spectroscopic Characterization of Molecular Compounds

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Optical rotations were measured on a JASCO DIP-370 digital polarimeter. IR spectrum was carried out on an AVATAR 370 FT-IR spectrometer (Thermo Nicolet). NMR spectra were recorded on a Bruker AV III-500 instrument at 500 MHz for 1 H and 125 MHz for 13 C using standard pulse programs and acquisition parameters. Chemical shifts were reported in δ (ppm) referencing to the NMR solvent pyridine-d 5 . HRESIMS data were acquired on an AB Sciex Triple TOF 5600 spectrometer. GC analysis was conducted on an Agilent 6890 N gas chromatograph system using a DB-624 capillary column (30 m × 0.53 mm, 3.0 µm, Agilent Technologies).
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10

HPLC-MS Analysis of Organic Compounds

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HPLC was performed using an Elite P230 system (Dalian Elite Analytical Instrument Co., Ltd., Dalian, China). ESI-MS was measured on an LTQ XL linear ion trap mass spectrometer (Thermo, Wilmington, MA, USA). HR-ESI-MS was obtained using an AB SCIEX Triple TOF 5600+ spectrometer (AB SCIEX, Boston, MA, USA). Melting point was measured on a WRR melting point apparatus (Shanghai Jingke Instrument Co., Ltd., Shanghai, China) and was uncorrected. Optical rotation was performed using an Anton Paar MCP 300 polarimeter (Anton Paar Opto Tec GmbH, Seelze, Germany) and was uncorrected. 1D (1H, 13C and DEPT 135°) and 2D (1H-1H COSY, 1H-13C HSQC and 1H-13C HMBC)-NMR spectra were performed using a Bruker Avance III 500 MHz instrument (Bruker, Billerica, MA) with CDCl3 (T1, T2, and T3) or C3D6O (T4) as the solvent and TMS as the internal standard.
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