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55 protocols using annexin 5 pe

1

Apoptosis Profiling of B-ALL Cells

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Following 24 hours or 72 hours treatment of DMSO or SF2535, B-ALL cells were resuspended in 1X Annexin V binding buffer (Becton Dickinson) at a concentration of 1×106 cells per mL. 2.5μl Annexin V PE (BioLegend) and 2.5μl DAPI (50μg/mL, Invitrogen) were added to 100μl of the cell suspension. After 15 min incubation at room temperature in the dark, B-ALL cells were analyzed by flow cytometry using BD FACS Canto II.
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2

NK Cell-Mediated Cytotoxicity Assay

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Target YAC‐1 cells were labelled with carboxyfluorescein succinimidyl ester (CFSE; C1031, Beyotime) at a final concentration of 5 μM. They were then co‐cultured with effector NK cells at an effector‐to‐target cell (E:T) ratio of 2:1 or 0:1 for 4 h at 37°C under 5% CO2. After 4 h, the samples were stained with Helix NP NIR (425301, BioLegend) and Annexin V‐PE (640908, BioLegend) for 10 min. Fluorescence‐activated cell sorting (FACS) analysis was performed immediately with a BD LSR Fortessa Cell Analyzer (BD Biosciences). The Incucyte S3 Live‐Cell Analysis Instrument (Sartorius AG) was used to monitor the killing activity of NK cells. Propidium iodide (C1052, Beyotime) was used to mark dead cells.
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3

Assessing Treg Cell Apoptosis

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CD4+ T cells isolated from Foxp3Cre and Foxp3CremiR-142fl/fl spleens by EasySep Mouse CD4+ T Cell Isolation Kit (STEMCELL Technologies, Vancouver, British Columbia, Canada) were sorted for YFP expressing cells using BD FACSAria II instrument. CD4+YFP+ Treg cells were stimulated with anti-CD3 (1 μg/mL) specific antibodies for 48 hours, stained with Annexin V-PE (BioLegend) and analyzed by flow cytometry. For the IFNγ-induced apoptosis of Treg cells assay, splenocytes were cultured for 24 hours in the presence or absence of IFNγ (10 ng/mL) and then harvested and stained with Annexin V-PE for fluorescence activated cell sorting (FACS) analysis.
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4

Annexin V and 7-AAD Staining

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Single cell suspensions were washed once with Hank’s Salt solution, containing Calcium and Magnesium (HSS) (Millipore, L 2035) and supplemented with 2% FCS. Cells were resuspended in 100μl of wash buffer containing the manufacturers recommended concentration of AnnexinV-PE (Biolegend, 640908). Samples were incubated for 20 minutes at 4°C along with surface marker antibody stains. Cells were then washed with 800μl of HSS plus 2% FCS and resuspended in 200μl. 7-AAD (Biolegend, 420404) was added to the 200μl cell suspension shortly before analysis on the flow cytometer at the manufacturers recommended concentration. Live cells were considered 7-AAD- and AnnexinV-.
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5

Flow Cytometric Analysis of Plasma Microvesicles

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Plasma samples were stained with the following antibodies: CD41a-FITC (BD Pharmingen), annexinV-PE (BioLegend, San Diego, CA, USA), CD45-BrilliantViolet421 (BioLegend), and CD144-PE/Cy7 (BioLegend) (1 µL of each per 50 µL of plasma) for 15 min at 37 °C, then fixed with PFA and diluted with PBS directly before the measurement. PFA and PBS were filtered through a 0.1 µm filter to reduce the background. Samples were measured on a NovoCyte Quanteon Flow Cytometer (Agilent, Santa Clara, CA, USA), flow rate slow, with no gating, for a fixed amount of time. Obtained data are presented as either densities (events/µL) or median florescence intensity (MFI). A flow cytometry schema of gating platelet-derived and procoagulant microvesicles is shown in Figure 1A.
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6

Evaluating T Cell Activation and Death

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To examine RICD, activated T cells (105 cells/well) were plated in triplicate in 96-well round-bottom plates and treated with anti-CD3ε mAb OKT3 (1–100 ng/ml) in cRPMI + 100 IU/ml rhIL-2 for 24 hours. R59949 (5–10 μM), R59022 (5–10 μM), DAG (50 μM), U0126 (5 μM), FR180204 (10 μM) or Rottlerin (6 μM) inhibitors were added 30 minutes before restimulation. At 24 hours post-restimulation, cells were stained with 1 μg/ml propidium iodide and collected for 30 seconds per sample on FACScan or Accuri C6 flow cytometers (BD). Cell death was analyzed with CellQuest/CFlow software (BD) or Flowing software (Turku Bioimaging) as percentage of cell loss = (1 − [number of viable cells (treated) / number of viable cells (untreated)]) × 100 (5 (link)).
For AnnexinV assays, ~1×106 cells were treated with OKT3 (10 ng/ml) as above. Cells were stained 6–12 hours later with AnnexinV-PE (Biolegend) and analyzed on an Accuri C6.
To evaluate CD25 expression, 1×106 cells were stimulated with OKT3 (100 ng/ml) for 24 hours, fixed and stained with anti-CD25 plus anti-mouse AlexaFlour488. Stained cells were collected on a FACSCalibur.
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7

Apoptosis Assessment of ALL Cells

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The viability of the ALL cells after VDL, Tysabri, or P5G10 treatment was determined by Annexin V-PE (BioLegend, San Diego, CA, USA) and 7-aminoactinomycin D (7-AAD) (BioLegend) staining and flow cytometry (FACScalibur, BD Biosciences, San Diego, CA, USA). The FlowJo 7.6.5 software (FlowJo, LLC, Franklin Lakes, NJ, USA was used to analyze the acquired data.
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8

BCG-Induced RAW264.7-MptpB Cell Apoptosis

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RAW264.7-MptpB cells stimulated by BCG (MOI = 10) for 24 h were stained with 7AAD-PerCP-Cy5.5 and Annexin V-PE (Biolegend). The FACS Canto II flow cytometer of FACS Diva software was used to analyze the stained cells.
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9

Apoptosis and Cell Cycle Analysis

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For apoptosis analysis, 1 × 105 cells were co-stained with annexin V-PE and 7-amino-actinomycin D (7-AAD, both from Biolegend, San Diego, CA, USA). Cell death was measured by a Flow Cytometer FACSCalibur (BD Biosciences, San Jose, CA, USA) as described before.46 (link) To determine cell-cycle distribution, 1 × 106 cells were fixed and stained with 70% cold ethanol and propidium iodide (PI). DNA contents were measured by flow cytometry. Data were analyzed using ModFit cell-cycle analysis software (Verity Software House).
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10

T Cell Apoptosis Induction Assay

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Jurkat T cells or primary CD4+ T cells were cultured at 1 × 106 cells/ml for 16 h in RPMI 10% FCS, 20 μg/ml DNase. Anti-Apo-1 (anti-Fas) and Protein A (0.1-1 μg/ml, gift from Min-Li Weber) were added and the culture was continued for a further 5 h. Samples were washed in PBS and stained with live/dead blue stain. Cells were washed once in AnnexinV binding buffer (Biolegend) then stained with anti-CD4-PeCy5 (Beckman Coulter) and AnnexinV-PE (Biolegend) for 20 min at RT. The cells were washed and fixed for 20 minutes with 2% paraformaldehyde in AnnexinV binding buffer. Tax staining was performed as described above. Gating strategy is outlines in Additional file 8.
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