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Lysis and extraction buffer

Manufactured by Thermo Fisher Scientific
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Lysis and Extraction Buffer is a solution designed for the lysis and extraction of biological samples, such as cells or tissues. It facilitates the release of intracellular components, including proteins, nucleic acids, and other biomolecules, to enable further analysis or processing.

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8 protocols using lysis and extraction buffer

1

Western Blot Analysis of Liver Proteins

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RIPA (Radio Immunoprecipitation Assay) Lysis and Extraction Buffer (Thermo Scientific ™) was added to frozen liver tissue samples, and they were grinded in a homogenizer. The obtained tissue homogenate was centrifuged at 15,000 rpm (10 min, 4°C) and the supernatant was left. Then the Pierce ™ BCA (bicinchoninic acid) Protein Assay Kit (Thermo Scientific ™) was used to determine protein concentration. Equal amounts of proteins were separated by 10–12% SDS polyacrylamide gels and transferred to polyvinylidene fluoride (PVDF) membranes. The PVDF membranes were blocked with 5% skim milk for 3 h on a shaker at room temperature and then incubated with the primary antibodies (diluted with 5% skim milk) overnight at 4°C, and the concentrations of the primary antibodies are as follows: the concentration of primary antibody used for GAPDH, p-AKT, AKT, Nrf2, HO-1, NLRP3, p-PI3K, PI3K, and Caspase-1 was 0.5 μg/ml, and the concentration of primary antibody used for PPARγ, and Caspase-3 was 1 μg/ml. The membranes were washed via Tris-Buffered Saline Tween-20 (TBST) three times for 10 min each time and then incubated with the secondary antibodies (diluted with TBST) on the second day. Finally, the membranes were visualized with the chemiluminescent HRP substrate after washed again by TBST and analyzed via Image J gel analysis software.
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2

Protein Extraction from Liver and Tumor

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Lysates of normal liver and tumor tissue were extracted using the Lysis and Extraction Buffer (Thermo Fisher Scientific) supplemented with the Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific) and the phosphodiesterase inhibitor (APExBIO). A list of the Abs used is provided in Table S2.
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3

Protein Expression Analysis of Irradiated Skin

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Skin tissues were harvested on days 14 and 21 after irradiation and cut into small pieces. The frozen tissue samples were resuspended in radioimmunoprecipitation assay (RIPA) Lysis and Extraction Buffer (#89900; Thermo Fisher Scientific, Waltham, MA, USA) and lysed using TissueLyser II (QIAGEN, Hilden, Germany). The lysates were centrifuged at 13,500× g for 20 min at 4 °C, and the supernatants were collected. The protein concentration was determined using the Bio-Rad DC Protein Assay Kit II (Bio-Rad, Hercules, CA, USA). Equal amounts of proteins were separated via SDS-PAGE and transferred to a ProtranTM nitrocellulose membrane (GE healthcare, Piscataway, NJ, USA). After blocking with 10% skimmed milk for 70 min at room temperature, the membranes were incubated with primary antibodies at 4 °C overnight, followed by HRP-conjugated secondary antibodies for 1 h at room temperature. The bands of interest were visualized using an enhanced chemiluminescence detection kit (GE healthcare) according to the manufacturer’s instructions. Protein bands were quantified using ImageJ (National Institutes of Health, Bethesda, MA, USA).
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4

Quantification of MCP-1 and Thrombospondin in Astrostim Cells

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For drug treatment studies, 20 µM Dex (Sigma-Aldrich) and 1 or 10 µM ACHP (Tocris) were pretreated to Astrostim cells before continued treatment during CNO application, as described. Conditioned media were collected during a period of 2 d in the absence of phenol red, as described above and in experimental details. The cell lysate was collected and digested using radioimmunoprecipitation assay Lysis and Extraction Buffer (Thermo Fisher Scientific), according to the manufacturer’s instructions. Sample concentrations were first measured using a BCA Protein Assay Kit (Pierce). Samples were analyzed using human MCP-1 (CCL2) or thrombospondin 1 ELISA kits (RayBiotech) according to the manufacturer’s instructions. For conditioned media samples, 213 or 226 µg of protein, respectively, was loaded into each well of the plates. For cell lysate samples, 53.5 µg of protein was loaded into each well. The measured absorbance was compared to a standard curve to determine protein concentration, which was normalized to the total protein added per well. A Quantibody Human Cytokine Array Kit (QAH-CYT-1-1; RayBiotech) was utilized to quantify MCP-1 (CCL2) protein in conditioned media from Astrostim cells and coculture spheres, according to the manufacturer’s instructions.
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5

Detecting Autoantibodies in Myositis

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Total protein from TSM15 cells was prepared with radio-immunoprecipitation assay Lysis and Extraction Buffer (Thermo Fisher Scientific). The membrane protein of TSM15 cells was also prepared using a Pierce Cell Surface Protein Isolation Kit (Thermo Fisher Scientific) in accordance with the manufacturer's instructions. The method of Western blotting was previously described. In brief, 15 µg of total protein, 15 µg of membrane protein, or 1 μg of recombinant human Jo-1 protein (Fitzgerald) was transferred by sodium dodecyl sulfate-polyacrylamide gel electrophoresis to polyvinylidene difluoride (PVDF) membranes (Amersham). Anti–Jo-1 antibodies (Novus) or Jo-1 IgG from Jo-1 antibody–positive myositis, as the primary antibody, were incubated on PVDF membranes for 1 hour and then incubated with anti-rabbit or anti-human secondary fluorescent antibodies for 1 hour. The bands were visualized using a chemiluminescence kit (ImmunoStar LD, Japan), and the relative density of bands was calculated using the Quantity One software program (Bio-Rad).
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6

Placental HIF1α and HIF2α Analysis

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After euthanasia, placental fragments were immediately snap-frozen into liquid nitrogen, then stored at –70°C for subsequent analysis. Placental samples were lysed in lysis and extraction buffer (Thermo Fisher Scientific) containing Halt Protease inhibitor cocktail (Thermo Fisher Scientific) and PhosSTOP (Roche). Equal amounts of total protein lysates were run on a Bolt 4%–12%, Bis-Tris, 1.0 mm, Mini Protein Gel (Thermo Fisher Scientific) and transferred onto a nitrocellulose membrane (Thermo Fisher Scientific). The membrane was then incubated overnight at 4°C in 5% BSA and 0.1% Tween-20 in PBS with HIF1α (rabbit monoclonal anti–mouse HIF1α, 1:1,000, Cell Signaling Technology, 14179S), HIF2α (rabbit monoclonal anti–mouse HIF2α, 1:1,000, Cell Signaling Technology, 57921S), or β-actin (rabbit monoclonal anti–mouse β-actin, 1:1,000, Cell Signaling Technology, 8457S) antibodies. Membranes were subsequently probed with specific HRP-conjugated secondary antibodies (1:1,000) (Cell Signaling Technology) for 1 hour at room temperature. Bands were revealed using iBright FL1000 (Thermo Fisher Scientific) and quantified using densitometric scanning with ImageJ. For each animal, the mean relative expression of HIF1α and HIF2α was calculated for at least 3 separate placentas. HIF1α and HIF2α expression levels were normalized to β-actin expression.
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7

Western Blot Analysis of Protein Extracts

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Western blot analysis was performed as described previously (19 (link)). Briefly, total protein extract was prepared from the cultured cell lines using radioimmunoprecipitation assay lysis and extraction buffer (Thermo Fisher Scientific, #89900) supplemented with protease inhibitor cocktail (Sigma-Aldrich, #11697498001). The concentration of total protein was quantitated using the Bradford dye-binding method (Bio-Rad, #5000006). Twenty micrograms of protein was loaded and separated by 4 to 15% Mini-PROTEAN TGX precast polyacrylamide gel (Bio-Rad, #4561085) and then transferred to 0.22 μm polyvinylidene fluoride (PVDF) membranes (Millipore, #ISEQ00010). PVDF membranes were blocked with 5% nonfat milk and incubated with specific antibodies for detecting different proteins (see detailed information about antibody information in table S2). After the blot is incubated in enhanced chemiluminescence chromogenic substrate (Millipore, #WBKLS0100), protein bands were detected by the ChemiDoc Touch Imaging System (Bio-Rad), and the signal was quantified using Image Lab software (Bio-Rad).
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8

Quantitative Western Blot Analysis

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Radioimmunoprecipitation assay Lysis and Extraction Buffer (Thermo Fisher Scientific) was employed for extracting total proteins. Western blot analysis was performed as previously described [21 (link)]. Antibodies (Santa Cruz Biotechnology, Santa Cruz, CA, USA) used for this study contained the primary antibodies against E-cadherin (sc-8426, 1:1,000), Vimentin (sc-6260, 1:1,000), ITGB8 (sc-514150, 1:1,000), internal control β-actin (sc-47778, 1:1,000) and the secondary antibody goat anti-mouse IgG-HRP (sc-2005, 1:5,000). Immunoreactive bands were determined by the Western Blotting Luminol Reagent (Santa Cruz Biotechnology), and protein level was quantified via Image Pro Plus 6.0 image analysis software (Bio-Rad, Hercules, CA, USA).
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