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15 protocols using tricane

1

Zebrafish Retinal Stab Injury Model

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Wild-type (AB) zebrafish used in the study were obtained from the China Zebrafish Resource Center (http://www.zfish.cn). All zebrafish experiments were approved by the Nantong University Experimental Animal Center (approval No. 20170320-017, approval date March 20, 2017). Zebrafish were maintained at 28°C on a 14-/10-hour light/dark cycle in a zebrafish breeding system (Haisheng Biotech, Shanghai, China). Adult (4–6 months old) zebrafish of both sexes with body weights of 0.4 to 0.5 g were randomly assigned to groups of three zebrafish each.
Retinal stab injuries were performed as previously described (Zhang et al., 2020). Briefly, zebrafish were anesthetized in 0.02% Tricane (Sigma-Aldrich, St. Louis, MO, USA); a sterile 30-G needle was used to puncture the back of the right eye through the sclera, once in each quadrant. The needle was inserted to the length of the bevel to ensure that the same amount of retinal damage occurred in all quadrants. The intact left eye served as a negative control.
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2

Labeling Individual Neurons via Focal Electroporation

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Focal electroporation was performed as described in [23 (link)]. Briefly, 4 dpf double transgenic Et(gata2a:EGFP);Tg(atoh7:GFP) larvae were anesthetized with tricane (0.02%, Sigma) and mounted on a custom-made slide. A micropipette was filled with a solution of fluorescent dextran (Dextran, Tetramethylrhodamine and biotin, 3000 MW, Lysine Fixable, Thermo Fisher Scientific, D7162, 0.2 mg/mL in dH2O) and single cells were electroporated in the isthmus. After the procedure, larvae were unmounted and allowed to recover. At 6 dpf, larvae were anesthetized and imaged using laser scanning confocal microscopy (488 nm and 461 nm excitation). Single cell morphologies were traced using the Simple Neurite Tracer plugin for ImageJ [82 (link)].
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3

Zebrafish Retinal Tissue Preparation

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Embryonic fish at 3 to 4 days post-fertilization (dpf) were anesthetized with 0.2 mg/ml Tricaine (Sigma-Aldrich A5040), and euthanized by decapitation. The heads were fixed in 4% paraformaldehyde in 0.1M phosphate buffer (pH 7.4) with 5% sucrose overnight at 4 C, rinsed, and processed for immunocytochemistry as described below.
For adult retinal flat-mount preparations, zebrafish were placed in the dark for 30 minutes and then anesthetized in Tricane (Sigma-Aldrich A5040) and euthanized by cervical dislocation. The eyes were enucleated and a radial cut was made along the ventral axis of the eyecup for orientation. The entire anterior segment was removed with microscissors, and the eyecup was placed in phosphate buffered saline (PBS), while the neural retina was gently removed from the retinal pigmented epithelium. Short relaxing cuts were made along the perimeter and isolated retinas were fixed in 4% paraformaldehyde in 0.1M phosphate buffer (pH 7.4) with 5% sucrose overnight at 4 C, rinsed, and processed for immunocytochemistry as described below.
For cryosections, tissue was prepared as described previously [32] (link).
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4

Circadian Rhythm Analysis of Transgenic Zebrafish

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Adult homozygous Tg(aanat2:EGFP-ΔCLK) fish were raised in a temperature-controlled recirculation water system under 12-hr:12-hr LD cycles, and transferred to DD at the end of the light period prior to sampling. Pineal glands were sampled at 4-hr intervals throughout two daily cycles under DD at 12 time points corresponding to circadian time (CT) 14, 18, 22, 2, 6, 10, 14b, 18b, 22b, 2b, 6b and 10b (Fig 4A), as previously described [42 (link)]. A pool of 16 pineal glands was collected at each time point. In addition, two control pools of 14 pineal glands were collected from Tg(aanat2:EGFP) fish at time points corresponding to CT2 and CT14b. Fish were anesthetized in 1.5 mM Tricane (Sigma-Aldrich) and decapitated. Fluorescent pineal glands were selectively removed under a dissecting microscope (Olympus SZX12) equipped with filters for excitation (460–490 nm) and emission (510–550 nm) of EGFP. Total RNA for mRNA analysis was isolated using RNeasy Lipid Tissue Mini Kit (Qiagen).
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5

Feeding Regimens and Caffeine Effects on Zebrafish

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Wild-type zebrafish (Danio rerio) were raised and cared for as per standard procedures in accordance with a protocol approved by the Southern Medical University Animal Care and Use Committee. Embryos and larvae were reared in embryo medium at 28 °C to 5 dpf. Zebrafish larvae with completely development from a single cluster at 5dpf were allocated randomly to a serial of different amount of feeding groups: 20 mg/d, 30 mg/d, 60 mg/d, 80 mg/d, 120 mg/d and 180 mg/d. Each group had 100 larvae and started to feed at 7 dpf for 10, 15 and 20 days in 1.5 L tanks after adaptive of deep water environment for one day. They were fed a larval food (Zeigler AP100) three times daily, which was grinded to powder until food can float on the face of water, and then exchanged by half water after fed for 2 h. For caffeine treatment, larvae were overfed with 1, 2.5, 5 and 8 % caffeine for 20 days, which were mixed well with larval food (Zeigler AP100) and grinded to powder. At each time point, all larvae in a tank were counted and harvested and killed by tricane (Sigma) overdose. The length of zebrafish was measured from tip of the nose to the end of body. Larvae were wiped dry and weighed on a Mettler AE 50 balance to the nearest milligram.
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6

HPLC Analysis of Steroid Hormones

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Acetonitrile, methanol, ethanol, tricane (Sigma-Aldrich, St. Louis, MO, USA), formic acid, and ammonium acetate (Sigma-Aldrich, Darmstadt, Germany) were HPLC grade. De-ionized water was prepared using a Milli-Q system (Millipore, Billerica, MA, USA). The blank bovine plasma, and the steroid standards, 11-deoxycorticosterone, corticosterone, aldosterone, 11-deoxycortisol, cortisol, androstenedione, testosterone, and tetra-deuterated cortisol, were bought from Sigma-Aldrich (purity > 99%, USA). The caffeine was refined in-house from food supplementary capsules (Nutricost, Vineyard, UT, USA). The chemical structure and purity were confirmed by NMR (Bruker, Rheinstetten, Germany) and HR-MS (Waters, MA, USA) in our laboratory (See Supplementary Materials). The solid-phase extraction cartridges (HLB, 100 mg sorbent per cartridge) were purchased from Waters (Milford, MA, USA).
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7

Acute Exposure Assays in Zebrafish

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Briefly, the acute exposure assays followed the protocol as described [15 (link)]. The ethanol was administered acutely by placing individual zebrafish into 500 mL of 1% for 5 min (male n = 10, female n = 10). Caffeine (300 mg/L) was administered in a 1 L pre-treatment beaker for 5 min (male n = 10, female n = 10). The corresponding controls (male n = 10, female n = 10) which did not receive stimuli treatment during this time were housed in otherwise identical conditions. Following exposure testing, the animals were euthanized in 500 mg/L tricane (Sigma–Aldrich, USA) on an ice bath, and immediately dissected for further analysis.
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8

Zebrafish Larvae Preparation for Imaging

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The zebrafish were raised using the techniques outlined in [22 (link)]. For the present study, two variants of zebrafish larvae were used: the transgenic Tg (flk1:GFP) line, which exhibits green fluorescent protein (GFP) expressing endothelial cells [23 (link)]; and the mutant casper line, which is largely devoid of melanophores and iridophores [11 (link)]. All zebrafish strains were housed and maintained under standard husbandry conditions [3 ]. To prevent excess melanin production in the Tg (flk1:GFP) fish, the embryos were treated with 200 μM of PTU [10 (link)] at 10 h post fertilization (hpf). For fish treated with the anti-angiogenic drug indirubin-3′-monoxime (I3M, or IRO), 4 μM was added to the zebrafish egg water at 8 hpf. All zebrafish experiments were conducted in accordance with St. Michael’s Hospital Animal Care Committee approved protocol ACC403.
A glass-bottom petri dish (MatTek, USA) was filled with 300 μL of molten 1.5% low melting point agarose (Sigma, USA) at 40 °C. The agarose was allowed to set in a 4 °C fridge for 15 min. The zebrafish larvae were anesthetized using a 0.003% (w/v) solution of tricane (Sigma, USA), and pipetted onto the agarose filled petri dishes. Excess egg water was aspirated, and the fish was covered with 20 μL of the molten 40 °C agarose. The dishes containing larvae were left to set at room temperature for 30 min prior to imaging.
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9

Zebrafish Embryo Collection and Maintenance

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Wild-type AB stock was purchased from the Zebrafish International Resource Center (Eugene, OR). Eggs were obtained by placing breeding boats at the base of adult zebrafish tanks overnight, then bleached according to protocols described in The Zebrafish Book51 . From 0 d.p.f. larvae were kept in petri dishes containing embryo medium (E2) without methylene blue, prepared as described in The Zebrafish Book and washed daily up to and including 3 d.p.f. Larvae were anaesthetized with 400 μg ml−1 tricane (Sigma-Aldrich) during in vivo imaging.
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10

Xenopus Oocyte Isolation and Culture

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Pigmented Xenopus laevis females were housed at ∼18°C under 12 hr light/12 hr dark cycles at the Animal Resource Center (ARC) Bio II vivarium at the University of California, Santa Barbara (UCSB). All the procedures, including Xenopus surgery, ovary harvest, and post-surgical recovery, were performed according to a protocol approved by the institutional animal care and use committee at UCSB. Ovaries were surgically removed under anesthesia (0.3% w/v tricane, Sigma), cut into small pieces and then treated with 2 mg/ml collagenase A (Sigma-Aldrich C5138) in OR2 buffer (100 mM NaCl, 2 mM KCl, 1 mM 5 mM HEPES, pH 7.5) at room temperature until complete de-foliculation. The oocytes were recovered at 18°C for 12–24 hours in OR3 culture medium [50% Leibovitz's media L-15 (Sigma L1518), 13 mM HEPES, 90 g/ml gentamicin, 90 g/ml Fungizone (Amphotericin B), 90 g/ml penicillin/streptomycin, pH 7.5].
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