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11 protocols using anti jak1

1

Spleen Protein Extraction and Western Blot

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Spleen proteins were extracted using RIPA lysis buffer (Solarbio, Beijing, China) and centrifuged at 12,000 g for 10 min at 4°C. Protein concentration was assessed using the BCA Protein Assay Kit (Biosharp, Beijing, China). Samples containing equal amounts of protein (80 μg) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to 0.45 μm polyvinylidene difluoride membranes (Biosharp, Beijing, China). The non-specific binding sites on the membrane were then blocked with 5% fresh non-fat dry milk in Tris buffered saline TBS with Tween (10 mM Tris, 150 mM NaCl, pH7.4) with 0.1% Tween 20) for 2 h. Subsequently, they were incubated with primary antibodies (anti-IL-2, anti-STAT1, anti-SHP2, anti-JAK1, and anti-p-JAK1; 1:1000 dilution; Abcam, Cambridge, UK) and primary β-actin antibody (1:1,000 dilution; abmart, Shanghai, China) overnight at 4°C, respectively. After this, the membrane was washed followed by three 10 min washes in TBST, and then incubated with anti−mouse secondary antibody (1:2000 dilution; Cell Signaling Technology, Shanghai, China) for 2 h at room temperature followed by three 10 min washes in TTBS. Finally, the chemiluminescent signals were observed with a multifunctional gel imaging system (Bio-Rad, USA) and densitometry for immunoreactive bands was performed with National Institutes of Health software (Image J).
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2

Quantification of Colon Tissue Proteins

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Colon tissues (n = 6) were quickly shredded and mixed with protease inhibitor cocktails, which were randomly selected from every group. The mixture was homogenized by ultrasound on crushed ice and centrifuged at 13000g at 4°C for 10 min; the supernatant was extracted; and the protein concentration was determined by BCA protein assay. Equal amounts of total protein (60 μg) were separated by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membrane using a semidry transfer slot (Bio-Rad, USA). After blocking with 5% nonfat dried milk for 1 h, the membrane was incubated with proportionally diluted antibodies at 4°C overnight. The antibodies included rabbit anti-GAPDH (1:2,000), anti-BCL-2 (1:2,000), anti-BIM-1 (1:1,000), anti-caspase-3 (1:500), anti-BAX (1:1,000), anti-PP2A (1:1,000), anti-β-casein (1:2,500), anti-caveolin-1 (1:1,000), anti-Pim-1 (1:1,000), anti-JAK1 (1:1,000), anti-JAK3 (1:1,000), anti-PIAS1 (1:2,000), anti-PIAS3 (1:2,000), anti-Socs-1 (1:1,000), anti-P-STAT5 (1:1,000), and anti-STAT5 (1:1,000; Abcam). Then, samples were incubated with a corresponding secondary antibody (Abcam) for 1 h. After washing three times with TBST, the blots were visualized by the Proteogel imaging system (FluorChem M, ProteinSimple, USA) and quantified with the Quantity One System (Bio-Rad).
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3

Western Blot Analysis of Cell Cycle Markers

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Cell lysates was separated by SDS–polyacrylamide gel (4–10%) electrophoresis, and then transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Massachusetts, USA). The membranes were then blocked with 5% skimmed milk and incubated overnight at 4 °C with the following primary detection antibodies: anti-CENPK (1:1000, Abcam, Cambridge, England), anti-C-MYC (1:1000, Abcam, England), anti-Cyclin D (1:1000, CST, Boston, USA), anti-Cyclin E (1:1000, Abcam, Cambridge, England), anti-Rb (1:1000, CST, Boston, USA), anti-p-Rb (1:1000, CST, Boston, USA), anti-GAPDH (1:10,000, Abcam, Cambridge, England), anti-JAK1 (1:1000, Abcam, Cambridge, England), anti-STAT3 (1:1000, Abcam, Cambridge, England), or anti-p-STAT3 (1:1000, Abcam, Cambridge, England). The species-matched secondary antibodies were then incubated for 1 h at room temperature and the proteins were detected using BeyoECLPlus (Beyotime, Jiangsu, China).
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4

Detailed Antibody Reagents for Signaling

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The antibodies anti-FABP4 (number ab92501), anti-JAK1 (number ab47435), anti-JAK3 (number ab45141), anti-STAT1 (number ab30645), anti-STAT3 (number ab76315), anti-SOCS1 (number ab9870), anti-SOCS2 (number ab3692), and anti-Rap1a (number ab197673) were purchased from Abcam (Cambridge, MA). Anti-Src (number 2108S), anti-p-Src family (Tyr416 number 6943S), anti-STAT2 (number 72604S), anti-JAK2 (number 3230S), anti-p-JAK2 (Y1007/1008, number 3771S), and anti-p-STAT2 (number 88410S) antibodies were obtained from Cell Signaling Technology (Danvers, MA), while anti-β-actin (number sc-8432) was obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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5

Immunoblotting of JAK-STAT Pathway

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Rabbit anti-STAT1 (Cat#: ab109320), phospho-STAT1 (pi-STAT1; Cat#: ab109461), HMGB1 (Cat#: ab18256), anti-JAK1 (Cat#: ab133666), phospho-JAK1 (pi-JAK1; Cat#: ab138005) antibodies were purchased from Abcam (Cambridge, UK). Mouse anti-GAPDH (Cat#: sc-47724) antibody was purchased from Santa Cruz Biotechnologies (Dallas, TX, USA). Rabbit anti-OPN (Cat#: 22952-1-AP) antibody and mouse anti-Albumin (Alb; Cat#: 66051-1) was purchased from Proteintech (Rosemont, IL, USA). Rabbit PE-conjugated anti-mouse CD86 (Cat#: 159202) and MHCII (Cat#: 107615) antibodies were purchased from Biolegend (San Diego, CA, USA). IFNγ (Cat#: 315-05) was purchased from PeproTech (Rocky Hill, NJ, USA). Recombinant human OPN (Cat#: 1433-OP-050) was purchased from R&D Systems (Minneappolis, MN, USA).
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6

Western Blot Analysis of Apoptosis-related Proteins

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Protein Lysis Buffer (Beyotime, Shanghai, China) was used to extract the protein from cells or arterial tissues of mice. BCA kit (Nanjing Jiancheng Biogngineering Institute Nanjing, China) was used to detect the protein concentration. Then, 30 μg proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyethylenedi fluoride (PVDF). The membrane was blocked with 3% skim milk for 1 h at room temperature followed by the incubation of the primary antibodies at 4°C overnight. The primary antibodies used as follows: anti-Bax (1:1000, Abcam, Cambridge, MA, USA), anti-p-Akt 1:1000, Abcam), anti-Bcl-2 (1:1000, Abcam), anti-Cleaved caspase 3 (1:1000, Abcam), anti-p-JAK1 (1:1000, Abcam), anti-JAK1 (1:1000, Abcam), anti-p-STAT3 (1:1000, Abcam), anti-STAT3 (1:1000, Abcam), anti-β-actin (1:1000, Abcam). The β-actin worked as an internal control. Next, the membranes were incubated with goat anti-rabbit or mouse IgG secondary antibodies (1:5000, Abcam) for 1 h at room temperature. Finally, the protein bands were detected using an efficient chemiluminescence (ECL) kit (Thermo Fisher Scientific).
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7

Interferon Signaling Pathway Analysis

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Human IFN-β recombinant protein (rhIFN-β) and human IFN-λ1 recombinant protein (rhIFN-λ1) were purchased from Abbkine (Wuhan, China) and MedChemExpress (Shanghai, China). The Cell Counting Kit (CCK-8) was obtained from Biosharp (Anhui, China). Pyridone 6 (JAK inhibitor I) (A13457) was purchased from Adooq Biosciences (Irvine, CA, USA). Antibodies used for Western blotting, anti-phospho-STAT1 (S727), anti-STAT1, and anti-IFI35 antibodies (all rabbit polyclonal antibodies), were obtained from Abmart (Shanghai, China). Anti-IFIT2, anti-TLR3, anti-IRF7, anti-IRF3, anti-USP18, and anti-ISG15 antibodies (all rabbit) were purchased from ABclonal (Wuhan, Hubei, China). Anti-JAK1, anti-JAK2, anti-phospho-JAK1, and anti-phospho-JAK2 antibodies (all rabbit) were purchased from Abcam (Cambridge, MA, USA). Anti-MDA5 (IFIH1) and anti phospho-IRF3 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-RIG-I (DDX58), anti-IFIT1, anti-IFIT3, anti-IFIT5, anti-IRF1, anti-IFITM1, and anti-β-actin antibodies were purchased from Proteintech (Chicago, IL, USA), and the antibodies used are listed in Additional file 7: Table S7. The monoclonal antibody against the JEV envelope (E) was kindly provided by Shengbo Cao (Huazhong Agricultural University, Wuhan, China). For immunofluorescence, rabbit anti-FLAG antibody was purchased from Proteintech.
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8

Western Blot Analysis of Spleen Proteins

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Total proteins were extracted from spleen tissues with a extraction Kit (KeyGen BioTECH, Nanjing, China), and the protein samples (30 μg) was separated onto a 8% SDS-PAGE gel (STAT1), 10% SDS-PAGE gel (JAK1, GATA1, EPOR), and then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked with 5% non-fat milk for 2 h, and then washed with Tris buffered saline Tween (TBST) for three times, 5 minutes each. Thereafter, PVDF membranes were incubated with primary antibodies anti-JAK1(1:1000), (Abcam, Cambridge, USA), anti-STAT1(1:500), anti-GATA1(1:500), anti-EPOR (1:500), and anti-GAPDH (1:1000), (Affinity, California, USA), at 4°C overnight. All membranes were washed with TBST buffer for 3 times, 10 minutes each, and then incubated with secondary antibodies at room temperature for 2 h, respectively. All immunoreactive bands were visualized with a ChemiDoc MP Imaging System (Bio-rad, USA) and analyzed by Gel-Pro32 software.
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9

JAK1 Mutant Signaling Pathways

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1 × 106 HEK293V cells were transiently transfected with 5 μg of empty vector (vector), wild-type (WT) or JAK1 mutant (A639G, S646P, P960S and V658F) plasmid using vigofect (Vigorous Biotechnology, Beijing, China). Cell lysate preparation, gel electrophoresis and transfer to polyvinylidene difluoride (PVDF) membranes were performed as previously described [33 (link)]. The phosphorylation of signaling proteins was investigated with the following phospho-specific antibodies: anti-phospho-JAK1 (Tyr1022/1023), anti-phospho-ERK (Thr202/Tyr204) and anti-phospho-AKT (Ser473) antibodies were purchased from Cell Signaling Technology (CST, Danvers, MA, USA). Anti-phospho-STAT3 (Tyr705) antibody was purchased from Abcam (Cambridge, UK). Blots were re-probed with anti-JAK1 (Abcam, Cambridge, UK), anti-STAT3 (Abcam, Cambridge, UK), anti-ERK1/2 (CST, Danvers, MA, USA), anti-AKT (CST, Danvers, MA, USA), and anti-GAPDH (Transgen biotech, Beijing, China) antibodies.
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10

TNBC Cell Protein Analysis

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Proteins extracted from TNBC cells (30 µg) were separated by SDS-PAGE, and electro-transferred onto a PVDF membrane. Membranes were blocked with 5% skimmed milk powder, and then incubated overnight with primary antibodies: anti-TMEM2 (1:1500, Abcam, Burlingame, CA, USA), anti-JAK1 and anti-p-JAK1 (1:2000, Abcam), anti-STAT1 and anti-p-STAT1 (1:2500, Abcam), anti-STAT2, anti-p-STAT2 and anti-GAPDH (1:3000, Abcam) at 4°C. Following incubation with secondary antibody (1:5000; Abcam), the immunoreactivities were detected by Immobilob ™ Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA).
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