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5 protocols using coomassie brilliant blue g250

1

Lipids, Polymers, and Buffers for Biophysical Analysis

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DMPC and POPC were kind gifts from Lipoid (Ludwigshafen, Germany). SMA(2:1) (hydrolysed from styrene/maleic anhydride (2:1), tradename Xiran SZ30010) and SMA(3:1) (Xiran SL25010 S25) copolymer solutions were kind gifts from Polyscope (Geleen, Netherlands). DIBMA (Sokalan CP 9) was kindly provided by BASF (Ludwigshafen, Germany). D2O was purchased from Deutero (Kastellaun, Germany) and NaCl from VWR (Darmstadt, Germany). 85% (w/v) H3PO4 in D2O and Na2HPO4 were from Sigma–Aldrich (Steinheim, Germany), and Coomassie Brilliant Blue G250, NaH2PO4, ethylenediamine tetraacetic acid (EDTA), sodium dodecyl sulphate (SDS), tris(hydroxymethyl)aminomethane (Tris), and Tris–HCl were from Carl Roth (Karlsruhe, Germany). All chemicals were purchased in the highest purity available.
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2

Enzymatic Assays for Metabolic Pathways

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ADP, aldolase, amyloglucosidase, ATP, bovine serum albumin, di-sodium hydrogen phosphate (Na2HPO4), fructose-6-phosphate, glycerol-3-phosphate dehydrogenase, glucose, glucose-6-phosphate, glucose-6-phosphate dehydrogenase, imidazole, magnesium chloride hexahydrate (MgCl2×6H2O), phosphoenolpyruvate, potassium chloride (КСl), potassium dihydrogen phosphate (KH2PO4), sodium azide (NaN3), sodium chloride (NaCl), sodium pyruvate, triose-phosphate isomerase and were purchased from Sigma-Aldrich (USA). NAD+, NADH, NADP+, NADPH, EDTA, phenylmethylsulfonyl fluoride (PMSF), dithiothreitol, sodium fluoride (NaF), lactate dehydrogenase, Coomassie Brilliant blue G-250 and Triton X-100 were purchased from Carl Roth (Karlsruhe, Germany). Diagnostic kits for determination of glucose and triacylglycerides were from Private Joint-Stock Company «Reagent» (Dnipro, Ukraine). Alpha-ketoglutaric acid was from Protista AB (Sweden).
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3

Proteomic Analysis of Cell Extracts

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After harvest, patch 2 (Fig. 1A) was transferred to sterile 10 mL glass tubes containing 2 mL of 1x PBS buffer pH 7.4, the tubes vortexed for 1 min and then sonicated (3 times for 30 s with 1 min pause each time) in a sonication bath (SONOREX SUPER RK 255 H, BANDELIN, Germany) at 35 kHz ultrasound wave. The cell suspension was then transferred into 2 mL tubes and centrifuged at 16,000 × g and 4 °C (Eppendorf, Germany) to pellet the cells. The cells were lysed in 50 µL lysis buffer (10 mM Tris; 5 mM EDTA; 0.29% NaCl; and 0.4% SDS) and processed as previously described [40 (link)]. A Bradford assay was used to estimate protein concentrations. For the SDS-PAGE, 75 µg of protein was precipitated with an equal volume of 20% trichloroacetic acid (TCA, Sigma) for 16 h at 4 °C. The proteins were then separated in a 12% acrylamide gel using the HoeferTM mini–Vertical Electrophoresis system (Thermo Fisher Scientific, USA) and the Laemmli-buffer system [40 (link)]. The protein bands were visualized by staining the gel in colloidal Coomassie Brilliant blue G-250 (Roth, Kassel, Germany). Protein bands were excised from the gel and subjected to in-gel tryptic digestion as described previously [40 (link)]. Tryptic peptides of all gel slices were then extracted for LC-MS/MS analysis.
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4

Redox Regulation of CP12 Proteins

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CrNTRC, OsNTRC, CrCP12, and AtCP12 recombinant proteins used in this assay were prepared as described in SI Appendix, Text, while reaction buffer used was IP lysis buffer. Then, 100 µg CP12 proteins were mixed with 150 µg NTRC proteins, 30 mM NADPH (Carl Roth, #AE14) or both. For untreated, positive, and negative controls, 100 µg CP12 or PRX1 proteins were treated with blank buffer, 5 mM reduced DTT (AppliChem, #A2948) or oxidized DTT (Sigma Aldrich, #D3511), respectively. All reactions were equalized to a final volume of 20 µL in PCR tubes and incubated at 37 °C for 1.5 h. Subsequently, each reaction was stopped by adding 7 µL ROTI®Load2 (4×) nonreducing loading dye (Carl Roth, #K930). The proteins were then separated by SDS-PAGE and stained with Coomassie Brilliant Blue G250 (Carl Roth #9598).
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5

Chemicals and Reagents Purification

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All chemicals were purchased from Sigma-Aldrich (Steinheim, Germany) or Fisher Scientific (Bremen, Germany) and used without further purification. Sequence-grade trypsin was purchased from Promega (Mannheim, Germany). Coomassie Brilliant Blue G 250 was purchased from Carl Roth (Karlsruhe, Germany). Unstained Precision protein standards broad range was purchased from Bio-Rad (Munich, Germany).
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