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Limulus amebocyte lysate assay

Manufactured by Associates of Cape Cod
Sourced in United States

The Limulus amebocyte lysate (LAL) assay is a laboratory test used to detect the presence of bacterial endotoxins. It utilizes the blood cells (amebocytes) of the Atlantic horseshoe crab (Limulus polyphemus) to identify and quantify endotoxin levels in a variety of samples, including pharmaceutical products, medical devices, and other materials.

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17 protocols using limulus amebocyte lysate assay

1

Dengue Virus EDIII Protein Purification

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The preparation of dengue ED3 protein was performed as previously described [12 (link)]. Briefly, four serotypes of consensus ED3 cDNA were synthesized and cloned into the pET-22b (+) vector and expressed in Escherichia coli BL21. Recombinant ED3 was purified by immobilized metal affinity chromatography. The eluent from the affinity column was then polished using an anion exchange column (DEAE sepharose fast flow; GE) after dialysis against DEAE buffer [50 mM NaH2PO4/1 M urea (pH 5.8)]. An E membrane (Pall, USA) was used to remove endotoxin. Endotoxin levels of purified ED3 were determined using the Limulus amebocyte lysate (LAL) assay (Associates of Cape Cod, Inc. Cape Cod, MA), and the resulting endotoxin levels were less than 0.06 EU/mg.
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2

Subcellular Fractionation and LPS Quantification

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Subcellular cell fractions were extracted by a digitonin-based fractionation with modifications [30 ]. Briefly, Caspase-4-/- HeLa or Caco2 cells post incubation with indicated strain or purified OMVs were washed with sterile cold PBS 6 times on a platform shaker on ice to remove attached bacteria or OMVs. Subsequently, 250 or 100 μL of 0.005% digitonin extraction buffer was added to the bacteria-incubated cells in 12-well plates or OMV-incubated cells in 24-well plates, respectively. After 8 min, the supernatants were collected by centrifugation as the fraction containing cytosol, and the residuals were resuspended in 250 or 100 μL of 0.1% CHAPS buffer, respectively, as the fraction containing cell membrane, organelles and nucleus. Cytosol and residual fractions were subjected to the Limulus Amebocyte Lysate (LAL) assay (Associates of Cape Cod, East Falmouth, MA, USA) according to the manufacturer’s instructions to quantify LPS.
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3

Phosphorothioate-Modified Oligonucleotide Synthesis

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MS19 (5′-AAAGAAAGAAAGAAAGAAAGAAAG-3′) with full phosphorothioate modification was synthesized in Takara Co. (Dalian, China). It is diluted in PBS and tested for endotoxin by using the Limulus amebocyte lysate assay (Associates of Cape Cod, Inc., East Falmouth, MA, USA). All reagents used were pyrogen-free.
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4

Immune Cell Phenotyping Protocol

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The following antibodies were from BD biosciences: FITC Rat anti-mouse CD4 (553651), FITC Rat anti-mouse CD8a (553031), FITC-conjugated hamster anti-mouse CD11c (553801), FITC Rat anti-mouse CD19 (553785), PE anti-mouse CD25 (553075), FITC Rat anti-mouse CD49b (561067), PE Hamster anti-mouse CD69 (553237), APC Rat anti-mouse CD86 (558703), PE Rat anti-mouse CD314 (558403), FITC labeled anti-mouse NK1.1 (553164), Alexa Fluor 647 Rat anti-mouse Foxp3 (560402) and FITC Rat anti-mouse H-2Kb (553569). The following antibodies were from R & D system: Rat anti mouse RAE-1 (MAB17581), Rat anti mouse H60 (MAB1155), Rat anti mouse MULT-1 (MAB2588). FITC goat anti-Rat (A24544) and Alexa Fluor 647 Goat anti-Rat (bs-0293G-AF647) were obtained from Novex and BIOSYNTHESIS, respectively. A CpG ODN (5'-TCGCGAACGTTCGCCGCGTTCGAACGCGG-3′) with full-phosphorothioate modification was synthesized in Takara Biotechnology Company (Dalian, China) and diluted in PBS buffer with no detectable endototin (Limulus amebocyte lysate assay, Associates of Cape Cod, Inc.). CpG ODN-conditioned supernatant was prepared by culturing mouse lymph node cells with CpG ODN at 6μg/ml for 48 hours and collecting the culture medium. All reagents used in this study were pyrogen-free.
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5

Plasma Biomarkers of Gut Permeability

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Plasma levels of sCD14, sCD163, and LBP were quantified using DuoSet ELISA kits (R&D Systems, Bio-Techne; catalog DY383-05, DY1607-05, and DY870-05, respectively). The plasma level of zonulin was measured using an ELISA kit from MyBioSource (catalog MBS167049). Detection of β-d-glucan in plasma was performed using Limulus Amebocyte Lysate assay (Glucatell kit, Associates of Cape Cod; catalog GT003).
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6

Cryptococcus Cell Wall Antigen Assay

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The assay was performed as previously described [55 ]. Cell wall antigens were prepared from Cryptococcus neoformans, strain KN99α. The cells were flash frozen in liquid nitrogen, combined with glass beads, and vortexed vigorously for 2 hours at 4°C to disrupt the cells. The insoluble fraction (i.e., cell wall) was analyzed for protein concentrations (bicinchoninic acid protein assay; Thermo Fisher Scientific, Rockford, IL). Endotoxin levels in all antigen preparations were undetectable (<0.06 U/ml) by Limulus amebocyte lysate assay (Associates of Cape Cod, East Falmouth, MA). Whole-blood samples were obtained from AIDS patients at screening for the Cryptococcus Optimal Timing of Anti-retroviral Therapy Trial in Sub-Saharan Africa [71 (link)]. Peripheral blood samples from each subject were drawn into lithium heparin tubes, diluted 2-fold with PBS, and dispensed into a tissue culture plate. Cell wall antigens containing 5 μg of protein were added to the wells, and PBS was used as the “unstimulated” control. The plates were incubated at 37°C in 5% CO2 for 20 hours. After incubation, the plasma was separated from the cells and stored at 4°C until chitinase activity analysis.
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7

Preparation and Characterization of Mycoplasma LAMPs

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LAMPs were prepared as described previously (He et al., 2009 (link)). Briefly, M. hyopneumoniae was cultivated in a mycoplasma medium until the beginning of the stationary growth phase (when a red pH indicator turned orange) and then collected by centrifugation. M. hyopneumoniae cells were washed with PBS twice and resuspended in 5 ml of Tris‐buffered saline (TBS; 50 mM Tris‐Cl, pH 8.0, 0.15 M NaCl) containing 1 mM EDTA (TBSE), to which Triton X‐114 was added to a final concentration of 2% and incubated at 4°C for 1 h. The lysate was then incubated at 37°C for 10 min for phase separation. After centrifugation, the upper aqueous phase was removed and replaced with the same volume of TBSE. The solution was vortexed and incubated at 4°C for 10 min. The phase separation process was repeated twice. The final Triton X‐114 phase was resuspended in TBSE to the original volume, and 2.5‐fold volumes of ethanol were then added to precipitate the membrane components overnight at −20°C. After centrifugation, the pellet was resuspended in PBS and lysed by sonication. Protein concentrations were examined using the Bradford assay (Thermo Scientific, Waltham, MA, USA). The endotoxin concentration of the heat‐inactivated mycoplasma LAMPs was <0.04 endotoxin units/ml, as checked by the Limulus amebocyte lysate assay (Associates of Cape Cod, Falmouth, MA, USA).
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8

Anti-β2GPI Antibody Induced APS Model

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The polyclonal anti-β2GPI antibodies were purified from sera of New Zealand rabbits immunized with human β2GPI peptide sequence (35GYVSRGGMRKFICPLTG51) according to our previous methods (23 (link)). The purified anti-β2GPI IgG could recognize human and mouse β2GPI as demonstrated by western blotting and ELISA (23 (link)). Our previous study demonstrated that this anti-β2GPI IgG could induce an APS mouse model. The isotype control antibodies (NR-IgG) from sera of normal rabbits were purified by Protein G Sepharose columns (GE Healthcare, Chicago, IL, USA). All the IgG samples and reagents were subjected to Detoxi-Gel™ (Pierce; Thermo Fisher Scientific, Inc., Waltham, MA, USA) to remove endotoxin contamination (<0.03 EU/ml) using the Limulus amebocyte lysate assay (Associates of Cape Cod, Inc., Falmouth, MA, USA).
C3H/HeN and C3H/HeJ mice (n=8 per treatment group) were twice injected intraperitoneally with anti-β2GPI (100 µg) or NR-IgG (100 µg) at 0 and 48 h. Surgical procedures to obtain peritoneal macrophages or aortas were performed at 72 h after the first injection. In addition, other groups of C3H/HeN and C3H/HeJ mice (n=8 in each group) were challenged with LPS (1 µg/g body weight; E. coli serotype O111:B4; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) 2 h before surgical procedures as the positive control.
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9

Endotoxin Analysis in Air Filters

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Endotoxin in filter extracts were analyzed using the Limulus Amebocyte Lysate assay (Pyrochrome LAL; Associates of Cape Cod Inc, Falmouth, MA), as described previously (Adhikari et al., 2009 (link); 2010 (link)). The samples were spiked with endotoxin standard of 0.50 EU/ml to assure that there was no inhibition or enhancement between the filter extracts and the reagents. The average amount of endotoxin per filter was 24.49 EU, which correspond to average airborne concentration of 4.87 EU/m3.
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10

Formulation of Anti-VEGF-B scFv

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Neutralization of the functional effects of VEGF-B by the anti-VEGF-B scFv was assessed using a VEGFR1/EpoR/BaF3 cellbased assay as described previously. 16, 28 Formulation of scFv for In Vivo Experiments
ScFvs were formulated for topical delivery as an eye drop to a final concentration of 1 mg/mL purified protein in 0.9% NaCl (Chem-Supply, Adelaide, Australia), 0.5% capric acid (Sigma-Aldrich Corp.) and 1.5% hypromellose (DOW, Midland, MI, USA), as described previously. 23 ScFvs were formulated for subconjunctival injection at 5 mg/mL with 20% wt/vol Pluronic F-127 (Sigma-Aldrich Corp.) in normal saline. Aseptic techniques and endotoxin-low glassware was used to prepare all scFv for in vivo use. Endotoxin levels were measured by the Limulus amebocyte lysate assay (Associates of Cape Cod, East Falmouth, MA, USA) and were below 3 EU/mL.
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