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Genomic dna isolation kit

Manufactured by Sangon
Sourced in China

The Genomic DNA Isolation Kit is a laboratory equipment designed to extract and purify genomic DNA from a variety of sample types. It utilizes a simple and efficient protocol to isolate high-quality DNA that can be used in various downstream applications, such as PCR, sequencing, and genetic analysis.

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19 protocols using genomic dna isolation kit

1

Multiplex LAMP and PCR for Bacterial Detection

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In total, 19 known bacterial strains, including a V. parahaemolyticus reference strain (ATCC 17802) and seven Salmonella sp. strains, were analyzed in this study (Table 1). All strains were stored in 10% (w/v) glycerol broth at −70 °C. Salmonella typhimurium CICC 21483 and V. parahaemolyticus ATCC 17802 strains were used for primer optimization and sensitivity testing. Vibrio strains were cultured in trypticase soy broth supplemented with 2% NaCl at 35 °C overnight. Non Vibrio strains were grown in Luria-Bertani broth at 37 °C.
Genomic DNA extraction was conducted using the boiling method. Briefly, 1 ml of overnight bacterial culture was centrifuged at 5,000 × g for 10 min and the pellet was suspended in 200 μl of TE buffer [10 mM Tris, 0.1 mM EDTA (pH 8.0)]. The bacterial suspension was boiled for 10 min and centrifuged at 12,000 × g for 5 min at 4 °C. The supernatant was used as the DNA template for multiplex LAMP and multiplex PCR assays. The genomic DNA of S. typhimurium CICC 21483 and V. parahaemolyticus ATCC 17802 was extracted with the Genomic DNA Isolation Kit (Sangon Biotechnology, Shanghai, China) following the manufacturer’s instructions.
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2

Comprehensive RNA Extraction and Analysis

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Total RNA was extracted from cells and tissues using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The gDNA was extracted using a genomic DNA isolation kit (Sangon Biotech, Shanghai, China). The nuclear and cytoplasmic fractions were extracted using a PARIS kit (Ambion, Life Technologies). RNA was reverse transcribed with a PrimeScript™ RT reagent kit (Takara, Tokyo, Japan). Based on the sequence of circRNAs, the divergent primers were designed to determine their authenticity. miRNAs-specific stem-loop primers were used to perform reverse transcription. Real-time quantitative PCR (qPCR) reactions were performed on a Bio-Rad CFX96 Real-Time Detection System using the SYBR Green PCR Master Mix (Takara, Tokyo, Japan). Data analyses were performed using the 2 −ΔΔCT method, as described previously [32 ]. Cattle GAPDH and U6 were used as internal controls.
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3

DNA Extraction and Fungal Identification Protocol

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DNA was extracted with cultures grown on SGA plates for 5–7 days at 27°C using a genomic DNA isolation kit (Sangon Biotech, Shanghai, China). All 114 isolates were identified by sequencing a part of BenA gene and ITS1–4 DNA primer sequences and PCR reaction conditions described previously.15 (link),16 (link) The obtained sequences were compared to the NCBI nucleotide database (BLAST; https://blast.ncbi.nlm.nih.gov/Blast.cgi). GenBank accession numbers for the generated ITS1–4 and BenA sequences are listed in the CNCB Genome Warehouse under accession number PRJCA01048.
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4

Plasmid Extraction and Enzyme Digestion

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Restriction enzymes (EcoRI), rTaq, DNA standards, DNA fragment recovery kit, genomic DNA isolation kit, and plasmid extraction kit were purchased from Sangong Biotech (Shanghai, China). PCR primers were synthesized by Takara Bio Inc. (Dalian, China). 2-nitrophenyl-β-D-galactopyranoside (oNPG) was obtained from J & K Scientific (Shanghai, China). All other chemicals were purchased from Nanjing Chemical Reagent Co., Ltd. (Nanjing, China) unless otherwise indicated.
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5

RNA Extraction and Quantification Protocol

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Total RNA was isolated from GH3 cells by Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. The cDNAs were obtained by Color Reverse Transcription Kit (with gDNA remover) (EZBioscience, Roseville, CA, USA). Genomic DNA (gDNA) was extracted using a Genomic DNA Isolation Kit (Sangon Biotech, Shanghai, China). Quantification of mRNA, miRNA, circRNA and gDNA was performed by using a SBRY Green PCR Kit (Takara, Tokyo, Japan), primers and Real-Time PCR System (Bio-Rad Laboratories, Inc., Hercules, CA, USA) The circRNA and mRNA levels were normalized to those of β-actin, while the miR-709 levels were normalized to the U6 and determined by 2-DDCt method. The primer sequences for the amplification of specific primers are listed in supplementary Table S1. Sanger sequencing (chain termination sequencing) is a method of DNA sequencing based upon the selective incorporation of chain-terminating dideoxynucleotides (ddNTPs) during in vitro DNA replication [55 (link)].
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6

Genomic DNA Extraction and SNP Genotyping Workflow

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Genomic DNA was extracted from whole blood samples using a genomic DNA isolation kit (Sangon Biotech, Shanghai, China) according to the manufacturer's instructions. The SNPscan system (Genesky Biotechnologies Inc., Shanghai, China) was used for genotyping. This system has been reported in detail elsewhere (http://biotech.geneskies.com/en/index.php/Index/fuwuer/id/29). Briefly, the technology is a multi-gene mutation screening method, which improves the multiplex ligation-dependent probe amplification technology. Four different fluorescent dyes and lengths of ligations were applied in order to detect multiple SNPs simultaneously in 1 reaction. Quality control assessment was performed during genotyping to ensure accuracy. The samples were blinded to laboratory personnel and blank controls were used for all PCR amplifications. Finally, 10% of samples from the subjects were randomly selected for evaluation of quality of genotyping, which showed 100% concordance. The sequences of specific ligase probes are presented in Table 1.
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7

Heterologous Expression of CmBBX8 in Arabidopsis

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CmBBX8 was heterologously expressed in A. thaliana by introducing the pENTR1A‐CmBBX8 (containing stop codon) construct using the primers CmBBX8 (B)‐F/CmBBX8 (E + Z)‐R, recombined into the final vector pBCKH using the LR recombination reaction (Hanano and Goto, 2011). The floral‐dip method was used for Agrobacterium‐mediated transformation (Clough and Bent, 1998). Afterwards, DNA was extracted by rapid plant Genomic DNA Isolation Kit (Sangon Biotech, Shanghai, China) following the manufacturer’s protocol, and the T1‐T3 seedlings were identified in DNA level with primer (35S‐F; gene‐R) listed in annexed table. The mutant bbx7 (SALK_137167) was obtained from the Arabidopsis Information Resource (www.arabidopsis.org/) and identified with primer (LBb1.3;bbx7‐F; bbx7‐R) in annexed table.
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8

Comprehensive Gene Expression Analysis

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A TRIzol reagent (Thermo Fisher Scientific) was used to extract total RNA. Meanwhile, genomic DNA (gDNA) was isolated using the Genomic DNA Isolation Kit (Sangon Biotech, Shanghai, China). After that, cDNA was synthesized using EntiLink™ 1st Strand cDNA Synthesis Kit (ELK Biotechnology). In addition, qPCR was performed using the EnTurbo™ SYBR Green PCR SuperMix on a Verse flow cytometry system (BD Biosciences, NJ, USA). The DreamTaq DNA Polymerase (Thermo Fisher Scientific) was used for PCR. Then, the cDNA and gDNA PCR products were analyzed by 2% agarose gel electrophoresis. β-Actin and U6 were used as internal controls. The primers are listed in Table 1.
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9

Total RNA and DNA Extraction

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Total RNAs of tissues and cells were extracted by using Trizol reagent (Invitrogen). All experiment operations were followed the manufacturer’s instruction of Trizol reagent. The procedure of RNAs extracted from nuclear fractions or cytoplasmic fractions were according to PARIS Kit (Life Technologies) manufacturer’s protocol. For DNA extraction, cells were rinsed with PBS twice and then extracted by Genomic DNA Isolation Kit (Sangon Biotech, China).
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10

Total RNA and Genomic DNA Extraction

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Total RNA samples were extracted from cells using Trizol (Invitrogen, USA) according to the manufacturer’s instructions. Genomic DNA (gDNA) was extracted using a genomic DNA isolation kit (Sangon Biotech, China).
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