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11 protocols using rorγt afkjs 9

1

Multiparameter Flow Cytometry Analysis of γδ T Cells

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Fluorochrome-labeled mAbs including mouse γδTCR (GL3, 1:100), Vγ4 (UC3-10A6, 1:500), Vγ1 (2.11, 1:500), CD24 (M1/69, 1:500), CD27 (LG.3A10, 1:500), CD62L (MEL-14, 1:500), and IL-17A (TC11-18H10.1, 1:500, Biolegend), CD44 (IM7, 1:200), RORγt (AFKJS-9, 1:200), and Ki-67 (SolA15, 1:200, eBioscience), IL-23R (753317, 1:10) and CCR6 (140706, 1:50, R&D system) were used. Anti-mouse Vγ6 (17D1, 1:500) was kindly provided by Dr. Tigelaar (Department of Dermatology, Yale University). For intracellular cytokine staining, cells were first blocked with anti-CD16/32 and then stained with different cell surface Abs. Cells were then fixed, permeabilized and stained intracellularly for IL-17, RORγt or Ki-67. The relevant isotype control mAbs were also used. Samples were harvested with BD FACS Calibur or Canto (Becton Dickinson, San Jose, CA) and analyzed with FlowJo software (TreeStar).
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2

Peptide-based T-cell Activation Assay

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Ova (ova323–339) (ISQAVHAAHAEINEAGR) and MART-1 (ELAGIGILTV) peptide were purchased from GenScript (Piscataway, NJ). Penicillin, streptomycin, glucose free RPMI-1640, IMDM were purchased from Life Technologies, Grand Island, NY. FBS was procured from BioAbChem Inc., Ladson, SC. All the recombinant cytokines except IL-2 (Shenandoah Biotechnology, Warwick, PA) and fluorochrome conjugated anti-mouse CD4 (GK1.5), CD73 (TY/11.8), CD26 (H194-112), CD44 (IM7), CD62L (MEL-14), IFN-γ (XMG1.2), IL-17a (TC11-18H10.1), IL-22 (Poly5164), IL-2 (JES6-5H4), TNF-α (MP6-XT22), CD25 (PC61) and T-bet (4B10) were purchased from BioLegend, San Diego, CA. Fluorochrome conjugated anti-mouse Vβ5.1,5.2 (MR9-4), IRF-4 (3E4), CD39 (24DMS1) and RORγt (AFKJS-9) were obtained from eBiosciences (San Deigo, CA). Anti-human Vβ12 was from Thermo Scientific (Rockford, IL). Purified anti-CD3, anti-CD28, anti-IFN-γ, anti-IL-4 were obtained from UCSF monoclonal antibody core, UCSF, CA. Anti-mouse pS6 conjugated with Alexa647 was purchased from Cell Signaling Technology (Danvers, MA). Tumor cells tested for antibody production were obtained from our collaborators as follows: 624-MEL (Dr. Michael Nishimura, Loyola University, Chicago), EL4 (Dr. Zihai Li, MUSC), B16-ova (Dr. Mark Rubinstein, MUSC).
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3

Kidney Leukocyte Isolation and Neutrophil Depletion

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Kidneys were minced into ~1 mm3 pieces and then digested with 0.5 mg/mL Collagenase D (Sigma), 0.5 mg/mL DNAse (Sigma) and 1 mg/mL Dispase (Stemcell Technologies) for 45 minutes at 37°C (200 rpm). Thereafter, the solution was filtered through 100 μm mesh, and the supernatant pelleted (1600 rpm, 5 minutes at 4°C), enriched through a percoll gradient (40 to 80%), and kidney leukocytes were collected and analyzed by FACS. Blood obtained from the retro-orbital sinus was immediately placed in heparinized tubes and washed with PBS followed by RBC lysis buffer (10 mM KHCO3, 16 mM NH4Cl, pH 7.3) prior to FACS analysis. Fluorophore-conjugated antibodies used for flow cytometry include B220 (RA3-6B2, BioLegend), CD4 (GK1.5, eBioscience), CD8 (53-6.7, eBioscience), CD11b (M1/70, BioLegend), CD45 (30-F11, eBioscience), Foxp3 (FJK-16S, eBioscience), IL-17A (eBio17B7, eBioscience), Ly6C (HK1.4, eBioscience), Ly6G (1A8, BD Biosciences), Ly6G (RB6-8C5, eBioscience), RORγT (AFKJS-9, eBioscience). For neutrophil depletion, 500 μg of purified anti-Ly6G (1A8, BioXcell) or isotype (Rat IgG2a, BioXcell) antibody was administered by intraperitoneal injection 10 days after C. albicans infection with sustained dosing every three days thereafter.
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4

Comprehensive Immune Cell Profiling

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Anti-mouse phosphor-STAT3 (EP2147Y, Abcam), phosphor-NF-κB (pp65) (sc-52401, Santa), phosphor-JNK (pJNK)(9H8), phosphor-ERK (pERK)(197G2), STAT3 (124H6, Cell Signaling), NF-κBp65 (sc8008, Santa), JNK (SC), ERK(137F5), and β-actin (sc-47778, Santa) were purchased. FITC-, PE-, APC- APC/cy7-, PerCP/Cy5.5-, or PE/cy7-conjugated anti-mouse CD4 (RM4-5, Biolegend), CD8 (ZUT270.5, Biolegend), CD45.1 (30-F11, Biolegend), MHCII (I-A/I-E, M5/114.115.2, Biolegend), CD11c (MCA1441GA, Biolegend), CD11b (M1/70, eBioscience), F4/80 (BM8, Biolegend), CD206 (CO68C2), Gr-1(RB6-8C5, eBioscience), IL-10 (JES5-16E3, eBioscience), Foxp3 (MF23, eBioscience), IL-22 (140301, R&D system), IFNγ (XMG1.2, Biolegend), RORγt (AFKJS-9, eBioscience), IL-17A (eBio17B7, eBioscience), and CD3ζ (H146-968, Abcam) antibodies were purchased. Anti- REG3γ (PA517, Thermo) and anti-MUC2 (H300, Santa) were also purchased. FITC-, PE-, APC- APC/cy7-, PerCP/Cy5.5-, or PE/cy7-conjugated isotypic controls were from Biolegend. RPMI1640, DMEM, fetal bovine serum (FBS), and antibiotics were obtained from HyClone. Alexa fluor 488-conjugated goat anti-rabbit IgGH&L and Alexa fluor 594-conjugated goat anti-rabbit IgGH&L (Abcam) were also purchased. 7-AAD was from Abcam.
Lactobacillus reuteri (ATCC PTA 4659) was a gift of BioGaaia, Sweden.
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5

Fluorochrome Antibody Staining Protocol

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Fluorochrome conjugates of antibodies against human Vβ11 (C21; Beckman Coulter), IFN-γ (4S.B3; Biolegend), CD4 (SK3; BD Biosciences), CD3 (HIT3a), CD8 (RPA-T8), IL-17 (64DEC17), and IL-4 (8D4-8), all from eBioscience, were used. Fluorochrome conjugates of antibodies against mouse CD24 (M1/69; Biolegend), B220 (RA3-6B2), CCR6 (140706), and IL-17 (TC11-18H10), all from BD Biosciences, CD4 (RM4-5), CD103 (2E7), Ki-67 (SolA15), IFN-γ (XMG1.2) and RORγt (AFKJS-9), all from eBioscience, were used.
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6

Kidney Leukocyte Isolation and Neutrophil Depletion

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Kidneys were minced into ~1 mm3 pieces and then digested with 0.5 mg/mL Collagenase D (Sigma), 0.5 mg/mL DNAse (Sigma) and 1 mg/mL Dispase (Stemcell Technologies) for 45 minutes at 37°C (200 rpm). Thereafter, the solution was filtered through 100 μm mesh, and the supernatant pelleted (1600 rpm, 5 minutes at 4°C), enriched through a percoll gradient (40 to 80%), and kidney leukocytes were collected and analyzed by FACS. Blood obtained from the retro-orbital sinus was immediately placed in heparinized tubes and washed with PBS followed by RBC lysis buffer (10 mM KHCO3, 16 mM NH4Cl, pH 7.3) prior to FACS analysis. Fluorophore-conjugated antibodies used for flow cytometry include B220 (RA3-6B2, BioLegend), CD4 (GK1.5, eBioscience), CD8 (53-6.7, eBioscience), CD11b (M1/70, BioLegend), CD45 (30-F11, eBioscience), Foxp3 (FJK-16S, eBioscience), IL-17A (eBio17B7, eBioscience), Ly6C (HK1.4, eBioscience), Ly6G (1A8, BD Biosciences), Ly6G (RB6-8C5, eBioscience), RORγT (AFKJS-9, eBioscience). For neutrophil depletion, 500 μg of purified anti-Ly6G (1A8, BioXcell) or isotype (Rat IgG2a, BioXcell) antibody was administered by intraperitoneal injection 10 days after C. albicans infection with sustained dosing every three days thereafter.
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7

Multiparameter T cell phenotyping

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Cell surface markers were stained for 30 min in the dark at 4 °C. Intracellular cytokine staining was performed using the ebioscience Foxp3 staining kit (ThermoFisher Scientific, Waltham MA) per manufacturer’s protocol. The following mouse antibodies from BioLegend (San Diego CA) were used: CD4 (GK1.5); CD8 (53-6.7); Tbet (4B10); Gata3 (16E10A23); Foxp3 (MF-14); IFNγ (XMG1.2); IL-10 (JES5-16E3); IL17 (TC11-18H10.1); and TGFβ (TW7-16B4). RORγt (AFKJS-9) was ordered from eBioscience (ThermoFisher Scientific). To show T cell reactivity, splenocytes were isolated from tumor bearing mice and cultured with 4T1 cells at a ratio of 5:1 (splenocytes to tumor cells) in the presence anti-CD107A/CD107B (ThermoFisher Scientific) and Monensin for 4 h. After 4 h, cells were stained for surface and intracellular markers described above. Flow cytometry analysis of T cell markers on human PBMCs was performed using the following clones: CD8 (RPA-T8); CD4 (SK3); Tbet (4B10); Ki67 (Ki67) from BioLegend; RORγt and granzyme B (GB11) from ThermoFisher Scientific.
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8

Multiparameter Flow Cytometry Analysis of γδ T Cells

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Fluorochrome-labeled mAbs including mouse γδTCR (GL3, 1:100), Vγ4 (UC3-10A6, 1:500), Vγ1 (2.11, 1:500), CD24 (M1/69, 1:500), CD27 (LG.3A10, 1:500), CD62L (MEL-14, 1:500), and IL-17A (TC11-18H10.1, 1:500, Biolegend), CD44 (IM7, 1:200), RORγt (AFKJS-9, 1:200), and Ki-67 (SolA15, 1:200, eBioscience), IL-23R (753317, 1:10) and CCR6 (140706, 1:50, R&D system) were used. Anti-mouse Vγ6 (17D1, 1:500) was kindly provided by Dr. Tigelaar (Department of Dermatology, Yale University). For intracellular cytokine staining, cells were first blocked with anti-CD16/32 and then stained with different cell surface Abs. Cells were then fixed, permeabilized and stained intracellularly for IL-17, RORγt or Ki-67. The relevant isotype control mAbs were also used. Samples were harvested with BD FACS Calibur or Canto (Becton Dickinson, San Jose, CA) and analyzed with FlowJo software (TreeStar).
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9

Multiparametric Flow Cytometry Analysis

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The following antibodies were used: CD45 (clone 30-F11), CD11b (M1/70), KLRG1 (2F1), CD103 (M290), NKg2a (20d5), Ly6C (AL-21), Ly6G (1A8), PD-L1 (MIH5), I-A/I-E (M5/114), CD11c (HL3), PDCA1 (927), CD64 (X54-5/7.1), B220 (RA3-6B2), CD24 (M1/69), CD4 (GK1.5), CD25 (3C7), CD3 (500A2), NKp46 (29A1.4), TNF-α (MP6-XT22), IFN-γ (XMG1.2), H2-Kb (AF6-88.5), and H2-Db (28–14–8) were from BD Biosciences; Tim3 (RMT3-23), PD-1 (29F.1A12), CD38 (90), Gr-1 (RB6-8C5), CD206 (C068C2), CD68 (FA-11) were from BioLegend; FoxP3 (FJK-16s), T-bet (4B10), GATA-3 (TWAJ), and RORγt (AFKJS-9) were from ThermoFisher Scientific; Granzyme B (REA226) was from Miltenyi; CD8 (KT15) was from MBL. Dead cells were stained with LIVE/DEAD Yellow or Aqua fluorescent reactive dye (Life Technologies) and excluded from analyses. Murine MHC-peptide multimers were from Immudex (Copenhagen, Denmark). Cells were analyzed using an Attune NxT flow cytometer (ThermoFisher Scientific), and results were analyzed with Kaluza (Beckman Coulter) software.
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10

Multiparameter Flow Cytometry Analysis

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Single-cell suspensions were stained with fixable viability dye for 30 minutes at 4°C, followed by preincubation with anti–mouse CD16/32 blocking Ab (1:100 dilution, TruStain fcX, BioLegend) for 10 minutes at 4°C. After Fc blocking, cells were stained with surface antigens at 4°C for 30 minutes. For intracellular staining of transcription factors and cytokines, cells were fixed and permeabilized using the Foxp3 transcription factor staining kit (Thermo Fisher Scientific). For intracellular cytokine staining, cells were prestimulated with 100 ng/mL phorbol 12-myristate 13-acetate (Sigma-Aldrich) and 1 μg/mL ionomycin (Sigma-Aldrich) for 4 hours in the presence of GolgiStop (BD Biosciences) during the last hour of incubation. Data acquisition was performed on an LSR II (BD Biosciences) and analyzed with FlowJo v10 (Tree Star, Inc.). For flow cytometry analysis, TCRγδ (GL3), IL-17A (17F3), TCRβ (H57-597), CD3 (145-2C11), CD45 (30-F11), CD11b (M1/70), CD11c (N418), FcεRI (MAR-1), CD49b (DX5), CD19 (6D5), F4/80 (BM8), Ly6G (1A8), CD4 (GK1.5), and GATA3 (16E10A23) were purchased from BioLegend. Fixable viability dye eFluor 780, Thy1.2 (53-2.1), Ki-67 (SolA15), and RORγt (AFKJS-9) were purchased from Thermo Fisher Scientific. CD1d-tetramer (PE or BV421 labeled) was obtained from the NIH tetramer core facility (Emory University).
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