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4 protocols using anti desmoplakin

1

Immunofluorescence and Western Blot Analysis of Cardiomyocytes

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Anti–α–actinin-2 was from Abcam [ab9465 (1:500) and ab137346 (1:200)] and Fitzgerald (70R-1068; 1:200). Anti-PKP2 was from SLBio (LS-C85371; 1:200). Anti-desmoplakin was from Abcam (ab71690; 1:200). Anti-Cx43 was from Abcam (ab11370; 1:200). Anti–N-cadherin was from Cell Signaling Technology (#14215; 1:100).
CMs cultured in growth medium were perm/fixed with 0.03% Triton X-100 (Thermo Fisher Scientific) and 1% paraformaldehyde (Thermo Fisher Scientific) in phosphate-buffered saline (PBS) containing calcium and magnesium (PBS+) at 37°C for 90 s. Cells were immediately postfixed in 4% paraformaldehyde in PBS+ at 37°C for 15 min. Cells were rinsed three times with PBS+ and permeabilized with 0.5% Triton X-100 in PBS+ for 10 min. Cells were blocked with 2% bovine serum albumin (BSA; Sigma-Aldrich) in PBS+. Primary and secondary antibodies were applied in 2% BSA in PBS+ and rinsed three times over 30 min with PBS+ between each treatment. For Western blot analyses, CMs were lysed in 2× NuPAGE LDS Sample Buffer (Life Technologies) containing 100 mM dithiothreitol and analyzed by SDS–polyacrylamide gel electrophoresis and immunoblotting with chemiluminescent horseradish peroxidase detection. Immunofluorescent images and Western blots were adjusted for brightness and contrast using ImageJ software (National Institutes of Health, Bethesda, MD).
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2

Immunoblotting Assay for Protein Analysis

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Immunoblotting was performed as described previously [41 (link), 45 (link)]. The sources of the primary antibodies (and their concentrations) were as follows: anti-PKC (anti-PKC alpha) (1:1,000), anti-phospho-pan-PKC (1:1,000), anti-β-catenin (1:1,000), anti-N-cadherin (1:1,000), anti-vimentin (1:1,000), anti-E-Cadherin (1:1,000), anti-ERK1/2 (1:1,000), anti-phospo-ERK1/2 (1:1,000), anti-JNK (1:1,000), anti-phospho-JNK (1:1,000), anti-AKT (1:1,000), anti-phospho-AKT (1:1,000), and anti-β-catenin (1:1,000) antibodies were purchased from Cell Signaling Technology (Danvers, MA); anti-WNT5A antibody (1:100) from R&D Biosystems (Minneapolis, MN); anti-Snail (1:200), anti-α-tubulin (1: 2,000), and anti-desmoplakin (1:1,000) antibodies from Abcam Inc (Cambridge, MA); anti-fibronectin (1:500) antibody from BD Biosciences (San Jose, CA); anti-lamin B1 (1:1,000) from Proteintech Group (Wuhan, China). To evaluate the nuclear and cytosolic fractions of β-catenin, a nuclear-cytosol extraction kit (FDbio Science, China) was used. Lamin B1 and α-tubulin were used as loading controls for the nuclear and cytoplasmic proteins, respectively.
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3

Antibody Sourcing for Cellular Protein Analysis

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Anticathepsin D, anti–c-Jun, and anti–Egr-1 were from Santa Cruz; anti–Iba-1 was from Wako; anti-CD44 was from Cell Signaling; antivimentin was from Dako; anti-GAPDH, antidesmoplakin, anti– HMOX-1, anti-Prdx6, anti- ALDH1A1, and anti- IGF1 were from Abcam; antiheat-shock protein 27 (hsp27) was from Novus; anticlusterin was from Chemicon, anticystatin C was from Upstate; and anti–α-actin was from Sigma.
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4

Immunoprecipitation of PTPRD and Desmoplakin

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Parental Sk-Mel-28 and 36T cell lines, pooled clones of Sk-Mel-28 expressing vector, WT and mutated PTPRD were lysed using ice-cold 0.5% Triton-X lysis buffer (1× Tris buffer saline, pH 7.4) for 20 min. Lysed cells were collected into a 1.5-ml microcentrifuge tube, lysed end over end for 20 min, and centrifuged for 10 min at 20,000g at 4°C. Five-hundred microgram to 2 mg of protein was immunoprecipitated overnight using 1 μg of PTPRD and desmoplakin antibody, respectively. Immunoprecipitates were washed and blotted for protein as previously described [Prickett et al., 2009 (link)]. Primary antibodies used in our analysis were anti-PTPRD (catalog number sc1118; Santa Cruz, Dallas, Texas), anti-Desmoplakin (catalog number ab71690; Abcam, Cambridge, MA), anti-PY20 (Zymed-Invitrogen, Grand Island, NY) and anti-α-tubulin (Calbiochem–EMD Biosciences, Billerica, MA). Desmoplakin constructs were a kind gift from Kathy Green (Northwestern University, IL).
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