The largest database of trusted experimental protocols

4 protocols using gtx118736

1

Isolation and Characterization of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the isolation of EVs, venous blood samples were collected from all study
participants. Whole blood was centrifuged at 13,000 × g for
20 min to isolate plasma. Next, EV isolation and purification from 1 mL of
plasma from each participant was performed using the exoEasy Maxi Kit (#76064;
QIAGEN Inc., Germantown, MD, USA) strictly following the manufacturer’s
instructions. The last step of EV isolation was elution of the EV from the
column. Typically, 400 μL of eluent was obtained.
The isolated EVs were confirmed to be exosomes based on the detection of
tetraspanins, cluster of differentiation (CD)-9, CD-63, CD-81, multivesicular
body synthesis proteins, tumor susceptibility gene (TSG)-101, heat shock protein
(HSP)-70, and the absence of mitochondrial protein and cytochrome c. The size
distribution of isolated EVs was determined by nanoparticle tracking. For the
Western blot analyses, antibodies against CD9 (ab92726; Abcam plc, Cambridge,
UK), CD63 (ab59479; Abcam plc, Cambridge, UK), anti-CD81 antibody (ab109201;
Abcam), TSG-101 (GTX118736; GeneTex Inc., Irwine, CA, USA), cytochrome c
(ab110325; Abcam plc, Cambridge, UK), and HSP-70 (NBP1-77456, Novus Biologicals
LLC, CO, USA) were used at a 1:1000 dilution. Nanoparticle tracking and
characterization were performed using the NanoSight NS300 Instrument (Malvern
Panalytical Ltd, Malvern, UK), following the manufacturer’s instructions.
+ Open protocol
+ Expand
2

Extracellular Vesicle Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from EV using RIPA buffer (Nacalai, Kyoto, Japan) and the concentration was measured by a Bradford assay (Bio-Rad). An amount of 50μg of extracted protein was separated by electrophoresis in 7.5% SDS-polyacrylamide gels. The proteins were transferred to a polyvinylidene difluoride membrane (Millipore). After that membranes were blocked with 5% skim milk in Tris-buffered saline containing 0.1% Tween 20 (TBST) for an hour at room temperature. Membranes were then incubated with primary antibodies, including rabbit anti-CD63 (GTX17441; GeneTex), rabbit anti-TSG101 (GTX118736; GeneTex), and rabbit apolipoprotein A1 (APOA1, GTX40453; GeneTex) at 1:1000 dilution overnight at 4°C. Membranes were washed with TBST, then incubated with HRP-conjugated goat anti-rabbit IgG (Thermo Fisher Scientific) at 1:10,000 dilution. The positive signals were analyzed by a luminescence imager (Image Quant LAS4000; GE Health Care, Little Chalfont, United Kingdom) using chemiluminescence reagents (Merck Millipore).
+ Open protocol
+ Expand
3

Plasma Exosomes Isolation and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma exosomes separation was performed mainly following the International Society of Extracellular Vesicles guidelines [19 (link)]. In brief, venous blood samples were collected from all study participants. Whole blood was centrifuged at 13,000× g for 20 min to isolate the plasma. Next, 1 mL of plasma from each participant was subjected to an exoEasy Maxi Kit (Qiagen, Valencia, CA, USA) for exosome isolation according to the manufacturer’s instructions. The last step of isolation was the elution of the exosomes from the column. In most cases, 400 μL of elution was obtained.
Detection of the presence of tetraspanins CD9 and CD63, and the tumor susceptibility gene 101 (TSG101) confirmed the isolation of exosomes. The size distribution of isolated exosomes was determined through nanoparticle tracking. For Western blot analysis, anti-CD9 antibody (ab92726, Abcam, Cambridge, UK), anti-CD63 antibody (ab59479, Abcam, Cambridge, UK), anti-TSG101 antibody (GTX118736, GeneTex, CA, USA), and anti-heat shock protein (HSP) 70 (NBP1-77456, Novus Bio, CO, USA) were used at a 1:1000 dilution. Nanoparticle tracking was performed using a NanoSight NS300 (Malvern Panalytical, Malvern, UK) under the manufacturer’s instructions.
+ Open protocol
+ Expand
4

Profiling Extracellular Vesicle Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells (1 × 105 cells) and EVs (2 × 1011/ml) were lysed in RIPA buffer containing protease inhibitors (Thermo Scientific). The protein concentrations were quantified using a bicinchoninic acid assay (BCA assay, Thermo Scientific). Protein lysates were resolved with sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS–PAGE), transferred onto polyvinylidene fluoride membranes (PVDF, Invitrogen) and immunoblotted with antibodies against HSP90 (k3720a, Biolegend), HSP70(4876, Cell signaling), AKT1 (Y89, Abcam), TSG101 (GTX118736, Genetex), EGFR (E114, Abcam) and EpCAM (MOC-31, Abcam). All antibodies were used at a 1,000-fold dilution (Cell Signaling). Following incubation with a HRP-conjugated secondary antibody (Cell Signaling), a chemiluminescence substrate was used for immunodetection (Thermo Scientific).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!